Total cross sections for ionizing processes induced by proton impact on molecules of biological interest: A classical trajectory Monte Carlo approach

In the current work, we present a study of ionizing interactions between protons and molecular targets of biological interest like water vapour and DNA bases. Total cross sections for single and multiple ionizing processes are calculated in the independent electron model and compared to existing theoretical and experimental results for impact energies ranging from 10 keV/amu to 10 MeV/amu. The theoretical approach combines some characteristics of the classical trajectory Monte Carlo method with the classical over-barrier framework. In this "mixed" approach, all the particles are described in a classical way by assuming that the target electrons are involved in the collision only when their binding energy is greater than the maximum of the potential energy of the system projectile-target. We test our theoretical approach on the water molecule and the obtained results are compared to a large set of data and a reasonable agreement is generally observed specially for impact energies greater than 100 keV, except for the double ionization process for which large discrepancies are reported. Considering the DNA bases, the obtained results are given without any comparison since the literature is till now very poor in terms of cross section measurements. (C) 2009 Elsevier B.V. All rights reserved.