Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus

被引:20
|
作者
Kim, Sang Guen [1 ,2 ]
Lee, Sung Bin [1 ,2 ]
Giri, Sib Sankar [1 ,2 ]
Kim, Hyoun Joong [1 ,2 ]
Kim, Sang Wha [1 ,2 ]
Kwon, Jun [1 ,2 ]
Park, Jungkum [3 ]
Roh, Eunjung [3 ]
Park, Se Chang [1 ,2 ]
机构
[1] Seoul Natl Univ, Coll Vet Med, Lab Aquat Biomed, Seoul 08826, South Korea
[2] Seoul Natl Univ, Res Inst Vet Sci, Seoul 08826, South Korea
[3] Rural Dev Adm, Crop Protect Div, Natl Inst Agr Sci, Wonju 55365, South Korea
来源
VIRUSES-BASEL | 2020年 / 12卷 / 12期
关键词
jumbo phage; giant phage; bacteriophage; Eneladusvirus; Erwinia amylovora; fire blight; COMPLETE GENOME SEQUENCE; NUCLEUS-LIKE COMPARTMENT; BIOLOGICAL-CONTROL; PHAGE; DNA; PROTEINS; PATHOGEN; FORMS;
D O I
10.3390/v12121373
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Jumbo phages, which have a genome size of more than 200 kb, have recently been reported for the first time. However, limited information is available regarding their characteristics because few jumbo phages have been isolated. Therefore, in this study, we aimed to isolate and characterize other jumbo phages. We performed comparative genomic analysis of three Erwinia phages (pEa_SNUABM_12, pEa_SNUABM_47, and pEa_SNUABM_50), each of which had a genome size of approximately 360 kb (32.5% GC content). These phages were predicted to harbor 546, 540, and 540 open reading frames with 32, 34, and 35 tRNAs, respectively. Almost all of the genes in these phages could not be functionally annotated but showed high sequence similarity with genes encoded in Serratia phage BF, a member of Eneladusvirus. The detailed comparative and phylogenetic analyses presented in this study contribute to our understanding of the diversity and evolution of Erwinia phage and the genus Eneladusvirus.
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页数:18
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