Fine-mapping genetic associations

被引:29
|
作者
Hutchinson, Anna [1 ]
Asimit, Jennifer [1 ]
Wallace, Chris [1 ,2 ,3 ]
机构
[1] Cambridge Inst Publ Hlth, MRC Biostat Unit, Cambridge Biomed Campus, Cambridge CB2 0SR, England
[2] Univ Cambridge, Jeffrey Cheah Biomed Ctr, Cambridge Inst Therapeut Immunol & Infect Dis CIT, Cambridge Biomed Campus, Cambridge CB2 0AW, England
[3] Univ Cambridge, Dept Med, Sch Clin Med, Cambridge Biomed Campus, Cambridge CB2 2QQ, England
基金
英国医学研究理事会; 英国惠康基金; 英国工程与自然科学研究理事会;
关键词
GENOME-WIDE ASSOCIATION; CAUSAL VARIANTS; BAYES FACTORS; STATISTICS; METAANALYSIS; INFORMATION; DESIGN;
D O I
10.1093/hmg/ddaa148
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Whilst thousands of genetic variants have been associated with human traits, identifying the subset of those variants that are causal requires a further 'fine-mapping' step. We review the basic fine-mapping approach, which is computationally fast and requires only summary data, but depends on an assumption of a single causal variant per associated region which is recognized as biologically unrealistic. We discuss different ways that the approach has been built upon to accommodate multiple causal variants in a region and to incorporate additional layers of functional annotation data. We further review methods for simultaneous fine-mapping of multiple datasets, either exploiting different linkage disequilibrium (LD) structures across ancestries or borrowing information between distinct but related traits. Finally, we look to the future and the opportunities that will be offered by increasingly accurate maps of causal variants for a multitude of human traits.
引用
收藏
页码:R82 / R89
页数:8
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