EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

被引：23
|
作者：
Sallet, Erika [1 ]
Gouzy, Jerome [1 ]
Schiex, Thomas
机构：
[1] CNRS, INRA, UMR441 2594, F-31320 Paris, France
来源：
BIOINFORMATICS | 2014年 / 30卷 / 18期
关键词：
RNA GENES;
D O I：
10.1093/bioinformatics/btu366
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
A Summary: It is now easy and increasingly usual to produce oriented RNA-Seq data as a prokaryotic genome is being sequenced. However, this information is usually just used for expression quantification. EuGene-PP is a fully automated pipeline for structural annotation of prokaryotic genomes integrating protein similarities, statistical information and any oriented expression information (RNA-Seq or tiling arrays) through a variety of file formats to produce a qualitatively enriched annotation including coding regions but also (possibly antisense) non-coding genes and transcription start sites.
引用
收藏
页码：2659 / 2661
页数：3
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