Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations

被引:77
|
作者
Giardine, Belinda [1 ]
Joly, Philippe [2 ,3 ]
Pissard, Serge [4 ]
Wajcman, Henri [5 ]
Chui, David H. K. [6 ]
Hardison, Ross C. [1 ,7 ]
Patrinos, George P. [8 ,9 ,10 ,11 ]
机构
[1] Penn State Univ, Ctr Computat Biol & Bioinformat, University Pk, PA 16802 USA
[2] Hosp Civils Lyon, Biochim Pathol Erythrocytaires, Lab Biochim & Biol Mol Grand Est, Grp Hosp Est, Bron, France
[3] Univ Claude Bernard Lyon 1, COMUE Lyon, Lab Interuniv Biol Motricite LIBM EA7424, Equipe Biol Vasc & Globule Rouge, Lyon, France
[4] GHU Grp Hosp Univ Henri Mondor, AP HP, Dept Genet, H Mondor & Inst Mondor Rech BiomedMINSEAM U955 Eq, Creteil, France
[5] CHU Henri Mondor, INSERM U955, Creteil, France
[6] Boston Univ, Sch Med, Dept Med Pathol & Lab Med, Boston, MA 02118 USA
[7] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[8] Univ Patras, Sch Hlth Sci, Dept Pharm, Lab Pharmacogen & Individualized Therapy, Patras, Greece
[9] Erasmus MC, Fac Med & Hlth Sci, Dept Pathol, Bioinformat Unit, Rotterdam, Netherlands
[10] United Arab Emirates Univ, Coll Med & Hlth Sci, Dept Pathol, Al Ain, U Arab Emirates
[11] United Arab Emirates Univ, Zayed Ctr Hlth Sci, Al Ain, U Arab Emirates
关键词
MICROATTRIBUTION;
D O I
10.1093/nar/gkaa959
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
HbVar (http:// globin.bx.psu.edu/hbvar) is a widelyused locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we report several advances for the database. We made clinically relevant updates of HbVar, implemented as additional querying options in the HbVar query page, allowing the user to explore the clinical phenotype of compound heterozygous patients. We alsomade significant improvements to the HbVar front page, making comparative data querying, analysis and output more user-friendly. We continued to expand and enrich the regular data content, involving 1820 variants, 230 of which are new entries. We also increased the querying potential and expanded the usefulness of HbVar database in the clinical setting. These several additions, expansions and updates should improve the utility of HbVar both for the globin research community and in a clinical setting.
引用
收藏
页码:D1192 / D1196
页数:5
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