Microarray analyses of lncRNAs and mRNAs expression profiling associated with diabetic peripheral neuropathy in rats

被引:22
|
作者
Guo, Guojun [1 ]
Ren, Sen [1 ]
Kang, Yu [1 ]
Liu, Yutian [1 ]
Duscher, Dominik [2 ]
Machens, Hans-Guenther [2 ]
Chen, Zhenbing [1 ]
机构
[1] Huazhong Univ Sci & Technol, Union Hosp, Dept Hand Surg, Tongji Med Coll, 1277 Jiefang Ave, Wuhan 430022, Hubei, Peoples R China
[2] Tech Univ Munich, Dept Plast & Hand Surg, Munich, Germany
基金
中国国家自然科学基金;
关键词
diabetic peripheral neuropathy; dorsal root ganglia; long noncoding RNAs; microarray analysis; messenger RNAs; LONG NONCODING RNAS; P2X(3) RECEPTOR; SCIATIC-NERVE; PAIN; DYSFUNCTION; MECHANISMS; COMPONENTS; PATHWAY; MODELS;
D O I
10.1002/jcb.28802
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Diabetic peripheral neuropathy (DPN) is considered to be the most frequent neuropathic complication of diabetes, and severely affects the quality of life of patients. Long noncoding RNAs (lncRNAs) participate in various pathophysiological processes and associate with many diseases. However, the exact impact of lncRNAs on DPN remains obscure. To discover a potential connection, a microarray study was conducted to analyze the expression profiling of lncRNAs and messenger RNAs (mRNAs) in dorsal root ganglia (DRG) from streptozotocin-induced diabetic rats with DPN. As a result, 983 lncRNAs and 1357 mRNAs were aberrantly expressed compared with control samples. Using bioinformatics analyses, we identified 558 Gene Ontology terms and 94 Kyoto Encyclopedia of Genes and Genomes pathways to be significantly enriched. Additionally, the signal-net analysis indicated that integrin receptors, including Itgb3, Itgb1, Itgb8, and Itga6, might be important players in network regulation. Furthermore, the lncRNA-mRNA network analysis showed dynamic interactions between the dysregulated lncRNAs and mRNAs. This is the first study to present an overview of lncRNA and mRNA expressions in DRG tissues from DPN rats. Our results indicate that these differentially expressed lncRNAs may have crucial roles in pathological processes of DPN by regulating their coexpressed mRNAs. The data may provide novel targets for future studies, which should focus on validating their roles in the progression of DPN.
引用
收藏
页码:15347 / 15359
页数:13
相关论文
共 50 条
  • [1] Microarray profiling and co-expression network analysis of the lncRNAs and mRNAs associated with acute leukemia in adults
    Cheng, Hui
    Huang, Chong Mei
    Wang, Yang
    Hu, Xiao Xia
    Xu, Xiao Qian
    Song, Xian Min
    Tang, Gu Sheng
    Chen, Li
    Yang, Jian Min
    MOLECULAR BIOSYSTEMS, 2017, 13 (06) : 1102 - 1108
  • [2] Expression profiling of lncRNAs and mRNAs in placental site trophoblastic tumor (PSTT) by microarray
    Gan, Jianfeng
    Chen, Zhixian
    Feng, Xuan
    Wei, Zhi
    Zhang, Sai
    Du, Yan
    Xu, Congjian
    Zhao, Hongbo
    INTERNATIONAL JOURNAL OF MEDICAL SCIENCES, 2022, 19 (01): : 1 - 12
  • [3] Genome-wide differential expression profiling of lncRNAs and mRNAs associated with early diabetic cardiomyopathy
    Tarun Pant
    Anuradha Dhanasekaran
    Xiaowen Bai
    Ming Zhao
    Edward B. Thorp
    Joseph M. Forbess
    Zeljko J. Bosnjak
    Zhi-Dong Ge
    Scientific Reports, 9
  • [4] Genome-wide differential expression profiling of lncRNAs and mRNAs associated with early diabetic cardiomyopathy
    Pant, Tarun
    Dhanasekaran, Anuradha
    Bai, Xiaowen
    Zhao, Ming
    Thorp, Edward B.
    Forbess, Joseph M.
    Bosnjak, Zeljko J.
    Ge, Zhi-Dong
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [5] Microarray expression profiling and co-expression network analysis of circulating LncRNAs and mRNAs associated with neurotoxicity induced by BPA
    Wei Pang
    Fu-Zhi Lian
    Xue Leng
    Shu-min Wang
    Yi-bo Li
    Zi-yu Wang
    Kai-ren Li
    Zhi-xian Gao
    Yu-gang Jiang
    Environmental Science and Pollution Research, 2018, 25 : 15006 - 15018
  • [6] Microarray expression profile of lncRNAs and mRNAs in the placenta of non-diabetic macrosomia
    Song, G. Y.
    Na, Q.
    Wang, D.
    Qiao, C.
    JOURNAL OF DEVELOPMENTAL ORIGINS OF HEALTH AND DISEASE, 2018, 9 (02) : 191 - 197
  • [7] Microarray expression profiling and co-expression network analysis of circulating LncRNAs and mRNAs associated with neurotoxicity induced by BPA
    Pang, Wei
    Lian, Fu-Zhi
    Leng, Xue
    Wang, Shu-min
    Li, Yi-bo
    Wang, Zi-yu
    Li, Kai-ren
    Gao, Zhi-xian
    Jiang, Yu-gang
    ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2018, 25 (15) : 15006 - 15018
  • [8] Microarray profiling and co-expression network analysis of lncRNAs and mRNAs in ovarian cancer
    Ce Gao
    Di Zhao
    Qing Zhao
    Dandan Dong
    Lin Mu
    Xuejun Zhao
    Man Guo
    Aili Xu
    Lei Fang
    Qian Liu
    Jianhua Che
    Cell Death Discovery, 5
  • [9] Microarray profiling and co-expression network analysis of lncRNAs and mRNAs in ovarian cancer
    Gao, Ce
    Zhao, Di
    Zhao, Qing
    Dong, Dandan
    Mu, Lin
    Zhao, Xuejun
    Guo, Man
    Xu, Aili
    Fang, Lei
    Liu, Qian
    Che, Jianhua
    CELL DEATH DISCOVERY, 2019, 5 (1)
  • [10] Microarray Profiling and Co-Expression Network Analysis of LncRNAs-mRNAs-miRNA in Hepatocellular Carcinoma
    Zhu, Ji-Min
    Zhu, Hairong
    Liu, Taotao
    Shen, Xi-Zhong
    HEPATOLOGY, 2016, 64 : 249A - 249A