The twin-beginnings of COVID-19 in Asia and Europe-one prevails quickly

被引:14
|
作者
Ruan, Yongsen [1 ]
Wen, Haijun [1 ]
Hou, Mei [1 ]
He, Ziwen [1 ]
Lu, Xuemei [2 ]
Xue, Yongbiao [3 ,4 ]
He, Xionglei [1 ]
Zhang, Ya-Ping [2 ]
Wu, Chung-, I [1 ,3 ,4 ,5 ]
机构
[1] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou 510275, Peoples R China
[2] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China
[3] Chinese Acad Sci, Beijing Inst Genom, Beijing 100101, Peoples R China
[4] China Natl Ctr Bioinformat, Beijing 100101, Peoples R China
[5] Univ Chicago, Dept Ecol & Evolut, 940 E 57Th St, Chicago, IL 60637 USA
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
SARS-CoV-2; COVID-19; D614G; twin-beginnings; fitness advantage;
D O I
10.1093/nsr/nwab223
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the spread of SARS-CoV-2, there have been multiple waves of replacement between strains, each of which having a distinct set of mutations. The first wave is a group of four mutations (C241T, C3037T, C14408T and A23403G [this being the amino acid change D614G]; all designated 0 to 1 below). This DG (D614G) group, fixed at the start of the pandemic, is the foundation of all subsequent waves of strains. Curiously, the DG group is absent in early Asian samples but present (and likely common) in Europe from the beginning. European data show that the high fitness of DG1111 requires the synergistic effect of all four mutations. However, the European strains would have had no time to evolve the four DG mutations (0 to 1), had they come directly from the early Asian DG0000 strain. Very likely, the European DG1111 strain had acquired the highly adaptive DG mutations in pre-pandemic Europe and had been spreading in parallel with the Asian strains. Two recent reports further support this twin-beginning interpretation. There was a period of two-way spread between Asia and Europe but, by May 2020, the European strains had supplanted the Asian strains globally. This large-scale replacement of one set of mutations for another has since been replayed many times as COVID-19 progresses.
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页数:9
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