Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil

被引：30

作者：

Xavier, Joilson ^{[1
,2
]}

Giovanetti, Marta ^{[2
,3
]}

Fonseca, Vagner ^{[3
,4
]}

Theze, Julien ^{[5
]}

Graf, Tiago ^{[6
]}

Fabri, Allison ^{[2
,6
]}

de Jesus, Jaqueline Goes ^{[1
]}

Lima de Mendonca, Marcos Cesar ^{[2
]}

dos Santos Rodrigues, Cintia Damasceno ^{[2
]}

Mares-Guia, Maria Angelica ^{[2
]}

dos Santos, Carolina Cardoso ^{[2
]}

de Oliveira Tosta, Stephane Fraga ^{[3
]}

Candido, Darlan ^{[5
]}

Ribeiro Nogueira, Rita Maria ^{[2
]}

de Abreu, Andre Luiz ^{[7
]}

Oliveira, Wanderson Kleber ^{[7
]}

Campelo de Albuquerque, Carlos F. ^{[8
]}

Chieppe, Alexandre ^{[9
]}

de Oliveira, Tulio ^{[4
]}

Brasil, Patricia ^{[10
]}

Calvet, Guilherme ^{[10
]}

Sequeira, Patricia Carvalho ^{[2
]}

Faria, Nuno Rodrigues ^{[5
]}

Bispo de Filippis, Ana Maria ^{[2
]}

Junior Alcantara, Luiz Carlos ^{[2
,3
]}

机构：

[1] Fiocruz MS, Inst Goncalo Moniz, Lab Patol Expt, Salvador, BA, Brazil

[2] Fundacao Oswaldo Cruz, Inst Oswaldo Cruz, Lab Flavivirus, Rio De Janeiro, Brazil

[3] Univ Fed Minas Gerais, Inst Ciencias Biol, Lab Genet Celular & Mol, Belo Horizonte, MG, Brazil

[4] Univ KwaZulu Natal, Coll Hlth Sci, KwaZulu Natal Res Innovat & Sequencing Platform K, Durban, South Africa

[5] Univ Oxford, Dept Zool, Oxford, England

[6] Univ Fed Rio de Janeiro, Inst Biol, Dept Genet, Rio De Janeiro, Brazil

[7] Minist Saude, Secretaria Vigilancia Saude, Brasilia, DF, Brazil

[8] Org Mundial Saude, Org Panamer Saude, Brasilia, DF, Brazil

[9] Superintendencia Vigilancia Estado, Rio De Janeiro, Brazil

[10] Inst Nacl Infectol Evandro Chagas, Rio De Janeiro, Brazil

来源：

PLOS ONE | 2019年 / 14卷 / 06期

关键词：

TRANSMISSION; POPULATION; MODEL; ZIKA;

D O I：

10.1371/journal.pone.0217871

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The emergence of chikungunya virus (CHIKV) has raised serious concerns due to the virus' rapid dissemination into new geographic areas and the clinical features associated with infection. To better understand CHIKV dynamics in Rio de Janeiro, we generated 11 near-complete genomes by means of real-time portable nanopore sequencing of virus isolates obtained directly from clinical samples. To better understand CHIKV dynamics in Rio de Janeiro, we generated 11 near-complete genomes by means of real-time portable nanopore sequencing of virus isolates obtained directly from clinical samples. Our phylogenetic reconstructions indicated the circulation of the East-Central-South-African (ECSA) lineage in Rio de Janeiro. Time-measured phylogenetic analysis combined with CHIKV notified case numbers revealed the ECSA lineage was introduced in Rio de Janeiro around June 2015 (95% Bayesian credible interval: May to July 2015) indicating the virus was circulating unnoticed for 5 months before the first reports of CHIKV autochthonous transmissions in Rio de Janeiro, in November 2015. These findings reinforce that continued genomic surveillance strategies are needed to assist in the monitoring and understanding of arbovirus epidemics, which might help to attenuate public health impact of infectious diseases.

引用

页数：14

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