Complete genome of Pseudomonas sp. DMSP-1 isolated from the Arctic seawater of Kongsfjorden, Svalbard

被引:5
|
作者
Zeng, Yin-Xin [1 ]
Zhang, Yi-He [1 ,2 ]
Qu, Jiang-Yong [2 ]
机构
[1] Polar Res Inst China, Key Lab Polar Sci, Shanghai 200136, Peoples R China
[2] Yantai Univ, Coll Life Sci, Yantai 264005, Peoples R China
基金
中国国家自然科学基金;
关键词
Pseudomonas; Marine bacteria; Arctic; Complete genome; DMSP catabolism; GENES; DNA;
D O I
10.1016/j.margen.2019.05.004
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The genus Pseudomonas is highly metabolically diverse and has colonized a wide range of ecological niches. The strain Pseudomonas sp. DMSP-1 was isolated from Arctic seawater (Kongsfjorden, Svalbard) using di-methylsulfoniopropionate (DMSP) as the sole carbon source. To better understand its role in the Arctic coastal ecosystem, the genome of Pseudomonas sp. strain DMSP-1 was completely sequenced. The genome contained a circular chromosome of 6,282,445 bp with an average GC content of 60.01 mol%. A total of 5510 protein coding genes, 70 tRNA genes and 19 rRNA genes were obtained. However, no genes encoding known enzymes associated with DMSP catabolism were identified in the genome, suggesting that novel DMSP degradation genes might exist in Pseudomonas sp. strain DMSP-1.
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页数:4
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