Halogen bonds in some dihalogenated phenols: applications to crystal engineering

被引:182
|
作者
Mukherjee, Arijit [1 ]
Desiraju, Gautam R. [1 ]
机构
[1] Indian Inst Sci, Solid State & Struct Chem Unit, Bangalore 560012, Karnataka, India
来源
IUCRJ | 2014年 / 1卷
关键词
crystal engineering; crystal structure prediction; elastic deformation; intermolecular interaction; X-RAY-STRUCTURE; STRUCTURAL LANDSCAPE; ANISOTROPIC ATOM; NONCOVALENT INTERACTIONS; PACKING ANALYSIS; BENZOIC-ACIDS; CO-CRYSTAL; CHLORO; ISOSTRUCTURALITY; POLYMORPHISM;
D O I
10.1107/S2052252513025657
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
3,4-Dichlorophenol (1) crystallizes in the tetragonal space group I4(1)/a with a short axis of 3.7926 (9) angstrom. The structure is unique in that both type I and type II Cl.....Cl interactions are present, these contact types being distinguished by the angle ranges of the respective C-Cl....Cl angles. The present study shows that these two types of contacts are utterly different. The crystal structures of 4-bromo-3-chlorophenol (2) and 3-bromo-4-chlorophenol (3) have been determined. The crystal structure of (2) is isomorphous to that of (1) with the Br atom in the 4-position participating in a type II interaction. However, the monoclinic P2(1)/c packing of compound (3) is different; while the structure still has O-H....O hydrogen bonds, the tetramer O-H.....O synthon seen in (1) and (2) is not seen. Rather than a type I Br....Br interaction which would have been mandated if (3) were isomorphous to (1) and (2), Br forms a Br....O contact wherein its electrophilic character is clearly evident. Crystal structures of the related compounds 4-chloro-3-iodophenol (4) and 3,5-dibromophenol (5) were also determined. A computational survey of the structural landscape was undertaken for (1), (2) and (3), using a crystal structure prediction protocol in space groups P2(1)/c and I4(1)/a with the COMPASS26 force field. While both tetragonal and monoclinic structures are energetically reasonable for all compounds, the fact that (3) takes the latter structure indicates that Br prefers type II over type I contacts. In order to differentiate further between type I and type II halogen contacts, which being chemically distinct are expected to have different distance fall-off properties, a variable-temperature crystallography study was performed on compounds (1), (2) and (4). Length variations with temperature are greater for type II contacts compared with type I. The type II Br....Br interaction in (2) is stronger than the corresponding type II Cl....Cl interaction in (1), leading to elastic bending of the former upon application of mechanical stress, which contrasts with the plastic deformation of (1). The observation of elastic deformation in (2) is noteworthy; in that it finds an explanation based on the strengths of the respective halogen bonds, it could also be taken as a good starting model for future property design. Cl/Br isostructurality is studied with the Cambridge Structural Database and it is indicated that this isostructurality is based on shape and size similarity of Cl and Br, rather than arising from any chemical resemblance.
引用
收藏
页码:49 / 60
页数:12
相关论文
共 50 条
  • [1] Crystal engineering with hydrogen bonds and halogen bonds
    Saha, BK
    Nangia, A
    Jaskólski, M
    CRYSTENGCOMM, 2005, 7 : 355 - 358
  • [2] Interplay of Hydrogen and Halogen Bonding in the Crystal Structures of 2,6-Dihalogenated Phenols
    Bauer, Jonathan O.
    Koschabek, Sarah
    Falk, Alexander
    CHEMISTRYSELECT, 2021, 6 (33): : 8736 - 8740
  • [3] Recent results with halogen bonds in crystal engineering
    Desiraju, Gautam R.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2015, 71 : S121 - S121
  • [4] Avoiding "Synthon Crossover" in Crystal Engineering with Halogen Bonds and Hydrogen Bonds
    Aakeroy, Christer B.
    Chopade, Prashant D.
    Desper, John
    CRYSTAL GROWTH & DESIGN, 2011, 11 (12) : 5333 - 5336
  • [5] Halogen Bonds in Crystal Engineering: Like Hydrogen Bonds yet Different
    Mukherjee, Arijit
    Tothadi, Srinu
    Desiraju, Gautam R.
    ACCOUNTS OF CHEMICAL RESEARCH, 2014, 47 (08) : 2514 - 2524
  • [6] On the energetic stability of halogen bonds involving metals: implications in crystal engineering
    Benito, Ismael
    Gomila, Rosa M.
    Frontera, Antonio
    CRYSTENGCOMM, 2022, 24 (24) : 4440 - 4446
  • [7] Energy-geometry relationships in biological halogen bonds: Applications to biomolecular engineering
    Ho, P. Shing
    Voth, Andrea Regier
    Khuu, Patricia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2009, 238
  • [8] Halogen Bonds in Inorganic Crystal Design
    Minguez, Guillermo
    Brammer, Lee
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2005, 61 : C362 - C362
  • [9] Fluorine prefers hydrogen bonds over halogen bonds! Insights from crystal structures of some halofluorobenzenes
    Dikundwar, Amol G.
    Sathishkumar, Ranganathan
    Row, Tayur N. Guru
    ZEITSCHRIFT FUR KRISTALLOGRAPHIE-CRYSTALLINE MATERIALS, 2014, 229 (09): : 609 - 624
  • [10] Halogen bonds versus hydrogen bonds in the crystal packing formation of halogen substituted anilines
    Konovalova, Irina S.
    Reiss, Guido J.
    ZEITSCHRIFT FUR KRISTALLOGRAPHIE-CRYSTALLINE MATERIALS, 2025,