Vibrational analysis of deoxy-andrographolide using MM/QM methods

被引:1
|
作者
Singh, P. K. [1 ]
Hasan, Tanveer [1 ]
Prasad, Onkar [1 ]
Sinha, Leena [1 ]
Jain, Sudha [2 ]
Raj, Kanwal [3 ]
Sundaraganesan, N. [4 ]
Misra, Neeraj [1 ]
机构
[1] Univ Lucknow, Dept Phys, Lucknow 226007, Uttar Pradesh, India
[2] Univ Lucknow, Dept Chem, Lucknow 226007, Uttar Pradesh, India
[3] Cent Drug Res Inst, Med & Proc Chem Div, Lucknow 226001, Uttar Pradesh, India
[4] Annamalai Univ, Dept Engn Phys, Annamalainagar 608002, Tamil Nadu, India
来源
SPECTROSCOPY-AN INTERNATIONAL JOURNAL | 2007年 / 21卷 / 5-6期
关键词
FT-IR spectra; lactones; normal mode analysis; MM; Hartree-Fock;
D O I
10.1155/2007/486281
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Bioactive natural products have an enormous economic importance as speciality chemicals. Extracts of the shrub Andrographis paniculata are widely used as herbal medicines in many countries. Diterpenoid lactones isolated from these extracts have been the subject of extensive investigation, and one of its constituent diterpenoid is deoxy-andrographolide. A complete normal coordinate analysis was performed for deo-andrographolide in terms of the calculation by using Classical mechanics and Quantum mechanical methods. The study of vibrational spectra helps in understanding the dynamical behaviour and hence a lot of information can be derived about the conformation. The geometrical parameters and the vibrational spectra have been discussed in detail.
引用
收藏
页码:279 / 292
页数:14
相关论文
共 50 条
  • [1] Vibrational analysis of boldine hydrochloride using QM/MM approach
    Misra, Neeraj
    Siddiqui, Shamoon Ahmad
    Srivastava, Ruby
    Pandey, Anoop Kumar
    Jain, Sudha
    SPECTROSCOPY-AN INTERNATIONAL JOURNAL, 2010, 24 (05): : 483 - 499
  • [2] Vibrational analysis of boldine hydrochloride using QM/MM approach
    Misra N.
    Siddiqui S.A.
    Srivastava R.
    Pandey A.K.
    Jain S.
    Spectroscopy, 2010, 24 (05): : 483 - 499
  • [3] Synthesis of deoxy-Andrographolide Triazolyl Glycoconjugates for the Treatment of Alzheimer's Disease
    Jatav, Surendra
    Pandey, Nishant
    Dwivedi, Pratibha
    Akhtar, Ansab
    Jyoti
    Singh, Ranjit
    Bansal, Ranju
    Mishra, Bhuwan B.
    ACS CHEMICAL NEUROSCIENCE, 2022, 13 (23): : 3271 - 3280
  • [4] COMP 352-Examining reaction free energies using QM/MM methods with chain of states methods or with vibrational subsystem analysis
    Brooks, Bernard R.
    Woodcock, H. Lee, III
    Hodoscek, Milan
    Zheng, Wenjun
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2008, 236
  • [5] QM/MM in GENESIS: Applications to anharmonic vibrational analysis of biomolecules
    Yagi, Kiyoshi
    Sugita, Yuji
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 256
  • [6] Anharmonic Vibrational Analysis of Biomolecules and Solvated Molecules Using Hybrid QM/MM Computations
    Yagi, Kiyoshi
    Yamada, Kenta
    Kobayashi, Chigusa
    Sugita, Yuji
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (03) : 1924 - 1938
  • [7] QM/MM vibrational mode tracking
    Herrmann, Carmen
    Neugebauer, Johannes
    Reiher, Markus
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2008, 29 (14) : 2460 - 2470
  • [8] Recent advances in QM and QM/MM methods
    Gordon, MS
    Schmidt, MW
    COMPUTATIONAL SCIENCE - ICCS 2003, PT IV, PROCEEDINGS, 2003, 2660 : 75 - 83
  • [9] Identifying carboxylate ligand vibrational modes in photosystem II with QM/MM methods
    Debus, Richard J.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (45) : 12613 - 12615
  • [10] Prediction and rationalization of protein pKa values using QM and QM/MM methods
    Jensen, JH
    Li, H
    Robertson, AD
    Molina, PA
    JOURNAL OF PHYSICAL CHEMISTRY A, 2005, 109 (30): : 6634 - 6643