Reproducibility and replicability in neuroimaging data analysis

被引:17
|
作者
Adali, Tulay [1 ]
Calhoun, Vince D. [2 ]
机构
[1] Univ Maryland Baltimore Cty, Dept CSEE, Baltimore, MD 21201 USA
[2] Emory Univ, Georgia State Univ, Georgia Inst Technol, Triinst Ctr Translat Res Neuroimaging & Data Sci, Atlanta, GA USA
关键词
consistency and accuracy; neuroimaging data analysis; replicability; reproducibility; BLIND SEPARATION; FMRI DATA; ALGORITHMS;
D O I
10.1097/WCO.0000000000001081
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Purpose of review Machine learning solutions are being increasingly used in the analysis of neuroimaging (NI) data, and as a result, there is an increase in the emphasis of the reproducibility and replicability of these data-driven solutions. Although this is a very positive trend, related terminology is often not properly defined, and more importantly, (computational) reproducibility that refers to obtaining consistent results using the same data and the same code is often disregarded. Recent findings We review the findings of a recent paper on the topic along with other relevant literature, and present two examples that demonstrate the importance of accounting for reproducibility in widely used software for NI data. We note that reproducibility should be a first step in all NI data analyses including those focusing on replicability, and introduce available solutions for assessing reproducibility. We add the cautionary remark that when not taken into account, lack of reproducibility can significantly bias all subsequent analysis stages.
引用
收藏
页码:475 / 481
页数:7
相关论文
共 50 条
  • [1] Opportunities for increased reproducibility and replicability of developmental neuroimaging
    Klapwijk, Eduard T.
    van den Bos, Wouter
    Tamnes, Christian K.
    Raschle, Nora M.
    Mills, Kathryn L.
    DEVELOPMENTAL COGNITIVE NEUROSCIENCE, 2021, 47
  • [2] Reporting checklists in neuroimaging: promoting transparency, replicability, and reproducibility
    Ekhtiari, Hamed
    Zare-Bidoky, Mehran
    Sangchooli, Arshiya
    Valyan, Alireza
    Abi-Dargham, Anissa
    Cannon, Dara M.
    Carter, Cameron S.
    Garavan, Hugh
    George, Tony P.
    Ghobadi-Azbari, Peyman
    Juchem, Christoph
    Krystal, John H.
    Nichols, Thomas E.
    Ongur, Dost
    Pernet, Cyril R.
    Poldrack, Russell A.
    Thompson, Paul M.
    Paulus, Martin P.
    NEUROPSYCHOPHARMACOLOGY, 2024, : 67 - 84
  • [3] The treatment of incomplete data: Reporting, analysis, reproducibility, and replicability
    Sidi, Yulia
    Harel, Ofer
    SOCIAL SCIENCE & MEDICINE, 2018, 209 : 169 - 173
  • [4] Reproducibility and Replicability in Geographical Analysis
    Kedron, Peter
    Frazier, Amy E.
    Trgovac, Andrew B.
    Nelson, Trisalyn
    Fotheringham, A. Stewart
    GEOGRAPHICAL ANALYSIS, 2021, 53 (01) : 135 - 147
  • [5] Reproducibility and Replicability
    Sweedler, Jonathan V.
    ANALYTICAL CHEMISTRY, 2019, 91 (13) : 7971 - 7972
  • [6] Reproducibility versus replicability
    Mezei, Mihaly
    CHEMICAL & ENGINEERING NEWS, 2019, 97 (24) : 3 - 3
  • [7] Interpretability, Reproducibility, and Replicability
    Adali, Tulay
    Guido, Rodrigo Capobianco
    Ho, Tin Kam
    Mueller, Klaus-Robert
    Strother, Stephen
    IEEE SIGNAL PROCESSING MAGAZINE, 2022, 39 (04) : 5 - 7
  • [8] Reproducibility and replicability in science
    不详
    ENVIRONNEMENT RISQUES & SANTE, 2019, 18 (05): : 433 - 433
  • [9] Reproducibility and replicability of systematic reviews
    Farhad Shokraneh
    World Journal of Meta-Analysis, 2019, (03) : 66 - 71
  • [10] Replicability and Reproducibility in Comparative Psychology
    Stevens, Jeffrey R.
    FRONTIERS IN PSYCHOLOGY, 2017, 8