Longitudinal and transverse 1H-15N dipolar 15N chemical shift anisotropy relaxation interference:: Unambiguous determination of rotational diffusion tensors and chemical exchange effects in biological macromolecules

被引:230
作者
Kroenke, CD
Loria, JP
Lee, LK
Rance, M
Palmer, AG
机构
[1] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[2] Univ Cincinnati, Dept Mol Genet Biochem & Microbiol, Cincinnati, OH 45267 USA
关键词
D O I
10.1021/ja980832l
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
High-resolution proton-detected heteronuclear correlation NMR spectroscopy allows the measurement of N-15 spin relaxation rates at multiple sites throughout a biological macromolecule. The rate constants are determined by stochastic internal motions on time scales of picoseconds to nanoseconds, overall molecular rotational diffusion on time scales of nanoseconds, and chemical exchange rates on time scales of microseconds to milliseconds. A new method has been developed for distinguishing the contributions of chemical exchange from the contributions due to anisotropic rotational diffusion by measuring both longitudinal and transverse interference between the H-1-N-15 dipolar and N-15 chemical shift anisotropy interactions. The spectroscopic experiment for measuring the longitudinal cross-correlation rate constant for H-1-N-15 dipolar/N-15 chemical shift anisotropy interference is based on the approach for measuring the transverse cross-correlation rate constant (Tjandra, N,; Szabo, A.; Bar, A. J. Am. Chem. Sec. 1996, 118, 6986-6991)but incorporates a novel method for averaging the relaxation rates of longitudinal magnetization and two spin order. Application of this technique to Escherichia coli ribonuclease H affords an improved description of rotational diffusion anisotropy and permits a more accurate assessment of chemical exchange in this molecule. The results definitively demonstrate that amino acid residues K60 and W90 are subject to conformational exchange processes, whereas increased transverse relaxation rates for residues in the helix alpha(D) arise from anisotropic rotational diffusion.
引用
收藏
页码:7905 / 7915
页数:11
相关论文
共 66 条
[1]  
Akke M, 1997, RNA, V3, P702
[2]   Pervasive conformational fluctuations on microsecond time scales in a fibronectin type III domain [J].
Akke, M ;
Liu, J ;
Cavanagh, J ;
Erickson, HP ;
Palmer, AG .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (01) :55-59
[3]   INFLUENCE OF CROSS-CORRELATION BETWEEN DIPOLAR AND ANISOTROPIC CHEMICAL-SHIFT RELAXATION MECHANISMS UPON LONGITUDINAL RELAXATION RATES OF N-15 IN MACROMOLECULES [J].
BOYD, J ;
HOMMEL, U ;
CAMPBELL, ID .
CHEMICAL PHYSICS LETTERS, 1990, 175 (05) :477-482
[4]   Cross-correlation-induced J coupling [J].
Bruschweiler, R .
CHEMICAL PHYSICS LETTERS, 1996, 257 (1-2) :119-122
[5]   LONG-RANGE MOTIONAL RESTRICTIONS IN A MULTIDOMAIN ZINC-FINGER PROTEIN FROM ANISOTROPIC TUMBLING [J].
BRUSCHWEILER, R ;
LIAO, XB ;
WRIGHT, PE .
SCIENCE, 1995, 268 (5212) :886-889
[6]   Backbone dynamics and structural characterization of the partially folded A state of ubiquitin by H-1, C-13, and N-15 nuclear magnetic resonance spectroscopy [J].
Brutscher, B ;
Bruschweiler, R ;
Ernst, RR .
BIOCHEMISTRY, 1997, 36 (42) :13043-13053
[7]   EFFECTS OF DIFFUSION ON FREE PRECESSION IN NUCLEAR MAGNETIC RESONANCE EXPERIMENTS [J].
CARR, HY ;
PURCELL, EM .
PHYSICAL REVIEW, 1954, 94 (03) :630-638
[8]   ANALYSIS OF THE BACKBONE DYNAMICS OF INTERLEUKIN-1-BETA USING 2-DIMENSIONAL INVERSE DETECTED HETERONUCLEAR N-15-H-1 NMR-SPECTROSCOPY [J].
CLORE, GM ;
DRISCOLL, PC ;
WINGFIELD, PT ;
GRONENBORN, AM .
BIOCHEMISTRY, 1990, 29 (32) :7387-7401
[9]   EQUILIBRIUM UNFOLDING OF ESCHERICHIA-COLI RIBONUCLEASE-H - CHARACTERIZATION OF A PARTIALLY FOLDED STATE [J].
DABORA, JM ;
MARQUSEE, S .
PROTEIN SCIENCE, 1994, 3 (09) :1401-1408
[10]   STUDIES OF CHEMICAL EXCHANGE BY NUCLEAR MAGNETIC RELAXATION IN ROTATING FRAME [J].
DEVERELL, C ;
MORGAN, RE ;
STRANGE, JH .
MOLECULAR PHYSICS, 1970, 18 (04) :553-&