Small molecule hydration energy and entropy from 3D-RISM

被引:45
|
作者
Johnson, J. [1 ]
Case, D. A. [1 ]
Yamazaki, T. [2 ]
Gusarov, S. [3 ]
Kovalenko, A. [3 ,4 ]
Luchko, T. [5 ]
机构
[1] Rutgers State Univ, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA
[2] Vancouver Prostate Ctr, 2660 Oak St, Vancouver, BC V6H 3Z6, Canada
[3] Natl Res Council Canada, Natl Inst Nanotechnol, 11421 Saskatchewan Dr, Edmonton, AB T6G 2M9, Canada
[4] Univ Alberta, Dept Mech Engn, Donadeo Innovat Ctr Engn 10 203, 9211-116 Str, Edmonton, AB T6G 1H9, Canada
[5] Calif State Univ Northridge, Dept Phys & Astron, Northridge, CA 91330 USA
基金
加拿大自然科学与工程研究理事会;
关键词
hydration free energy; hydration energy; hydration entropy; 3D-RISM molecular theory of solvation; molecular modeling; INTERACTION SITE MODEL; DENSITY-FUNCTIONAL THEORY; INTEGRAL-EQUATION THEORY; SOLVATION THERMODYNAMICS; CLASSICAL FLUIDS; AQUEOUS-SOLUTION; POLAR-MOLECULES; MEAN FORCE; WATER; SOLVENT;
D O I
10.1088/0953-8984/28/34/344002
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
Implicit solvent models offer an attractive way to estimate the effects of a solvent environment on the properties of small or large solutes without the complications of explicit simulations. One common test of accuracy is to compute the free energy of transfer from gas to liquid for a variety of small molecules, since many of these values have been measured. Studies of the temperature dependence of these values (i.e. solvation enthalpies and entropies) can provide additional insights into the performance of implicit solvent models. Here, we show how to compute temperature derivatives of hydration free energies for the 3D-RISM integral equation approach. We have computed hydration free energies of 1123 small drug-like molecules (both neutral and charged). Temperature derivatives were also used to calculate hydration energies and entropies of 74 of these molecules (both neutral and charged) for which experimental data is available. While direct results have rather poor agreement with experiment, we have found that several previously proposed linear hydration free energy correction schemes give good agreement with experiment. These corrections also provide good agreement for hydration energies and entropies though simple extensions are required in some cases.
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页数:17
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