Analytic second derivative of the energy for density-functional tight-binding combined with the fragment molecular orbital method

被引:12
|
作者
Nakata, Hiroya [1 ]
Nishimoto, Yoshio [2 ]
Fedorov, Dmitri G. [3 ]
机构
[1] R&D Ctr Kagoshima, Dept Fundamental Technol Res, 1-4 Kokubu Yamashita Cho, Kirishima, Kagoshima 8994312, Japan
[2] Kyoto Univ, Fukui Inst Fundamental Chem, Sakyo Ku, 34-4 Takano Nishihiraki Cho, Kyoto 6068103, Japan
[3] Natl Inst Adv Ind Sci & Technol, Res Ctr Computat Design Adv Funct Mat CD FMat, 1-1-1 Umezono, Tsukuba, Ibaraki 3058568, Japan
来源
JOURNAL OF CHEMICAL PHYSICS | 2016年 / 145卷 / 04期
关键词
FREQUENCY NORMAL-MODES; VIBRATIONAL FREQUENCIES; RAMAN-SPECTRA; LARGE SYSTEMS; SIMULATIONS; PROTEINS; DYNAMICS; MACROMOLECULES; CHEMISTRY; PARAMETRIZATION;
D O I
10.1063/1.4959231
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The analytic second derivative of the energy is developed for the fragment molecular orbital (FMO) method combined with density-functional tight-binding (DFTB), enabling simulations of infrared and Raman spectra of large molecular systems. The accuracy of the method is established in comparison to full DFTB without fragmentation for a set of representative systems. The performance of the FMO-DFTB Hessian is discussed for molecular systems containing up to 10 041 atoms. The method is applied to the study of the binding of alpha-cyclodextrin to polyethylene glycol, and the calculated IR spectrum of an epoxy amine oligomer reproduces experiment reasonably well. Published by AIP Publishing.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Density-Functional Tight-Binding Combined with the Fragment Molecular Orbital Method
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    Irle, Stephan
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (11) : 4801 - 4812
  • [2] Electron density from the fragment molecular orbital method combined with density-functional tight-binding
    Fedorov, Dmitri G.
    CHEMICAL PHYSICS LETTERS, 2021, 780
  • [3] Adaptive frozen orbital treatment for the fragment molecular orbital method combined with density-functional tight-binding
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    JOURNAL OF CHEMICAL PHYSICS, 2018, 148 (06):
  • [4] The fragment molecular orbital method combined with density-functional tight-binding and periodic boundary conditions
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    JOURNAL OF CHEMICAL PHYSICS, 2021, 154 (11):
  • [5] Third-order density-functional tight-binding combined with the fragment molecular orbital method
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    Irle, Stephan
    CHEMICAL PHYSICS LETTERS, 2015, 636 : 90 - 96
  • [6] The fragment molecular orbital method combined with density-functional tight-binding and the polarizable continuum model
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (32) : 22047 - 22061
  • [7] Three-Body Expansion of the Fragment Molecular Orbital Method Combined with Density-Functional Tight-Binding
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2017, 38 (07) : 406 - 418
  • [8] The Fragment Molecular Orbital Method Based on Long-Range Corrected Density-Functional Tight-Binding
    Van Quan Vuong
    Nishimoto, Yoshio
    Fedorov, Dmitri G.
    Sumpter, Bobby G.
    Niehaus, Thomas A.
    Irle, Stephan
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (05) : 3008 - 3020
  • [9] Large-Scale Quantum-Mechanical Molecular Dynamics Simulations Using Density-Functional Tight-Binding Combined with the Fragment Molecular Orbital Method
    Nishimoto, Yoshio
    Nakata, Hiroya
    Fedorov, Dmitri G.
    Irle, Stephan
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2015, 6 (24): : 5034 - 5039
  • [10] Analytic second derivative of the energy for density functional theory based on the three-body fragment molecular orbital method
    Nakata, Hiroya
    Fedorov, Dmitri G.
    Zahariev, Federico
    Schmidt, Michael W.
    Kitaura, Kazuo
    Gordon, Mark S.
    Nakamura, Shinichiro
    JOURNAL OF CHEMICAL PHYSICS, 2015, 142 (12):