Modeling multidimensional spectral lineshapes from first principles: application to water-solvated adenine

被引:23
|
作者
Segarra-Marti, Javier [1 ]
Segatta, Francesco [2 ]
Mackenzie, Tristan A. [1 ]
Nenov, Artur [2 ]
Rivalta, Ivan [2 ,3 ]
Bearpark, Michael J. [1 ]
Garavelli, Marco [2 ]
机构
[1] Imperial Coll London, Mol Sci Res Hub, Dept Chem, White City Campus,80 Wood Lane, London W12 0BZ, England
[2] Univ Bologna, Dipartimento Chim Ind Toso Montanari, Viale Risorgimento 4, I-40136 Bologna, Italy
[3] Univ Claude Bernard Lyon 1, Univ Lyon, ENS Lyon, Lab Chim,CNRS UMR 5182, F-69342 Lyon, France
基金
欧盟地平线“2020”;
关键词
2ND-ORDER PERTURBATION-THEORY; EXCITATION-ENERGY TRANSFER; MOLECULAR WAVE-FUNCTIONS; ANO BASIS-SETS; ELECTRONIC SPECTROSCOPY; FOURIER-TRANSFORM; EXCITED-STATES; DNA; FLUORESCENCE; ABSORPTION;
D O I
10.1039/c9fd00072k
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this discussion we present a methodology to describe spectral lineshape from first principles, providing insight into the solvent-solute molecular interactions in terms of static and dynamic disorder and how these shape the signals recorded experimentally in linear and nonlinear optical spectroscopies, including two-dimensional electronic spectroscopy (2DES). Two different strategies for simulating the lineshape are compared: both rely on the same evaluation of the coupling between the electronic states and the intra-molecular vibrations, while they differ in describing the influence exerted by the diverse water configurations attained along a molecular dynamics (MD) simulation. The first method accounts for such water arrangements as first order perturbations on the adenine energies computed for a single reference (gas phase) quantum calculation. The second method requires computation of the manifold of excited states explicitly at each simulation snapshot, employing a hybrid quantum mechanics/molecular mechanics (QM/MM) scheme. Both approaches are applied to a large number of states of the adenine singlet excited manifold (chosen because of its biological role), and compared with available experimental data. They give comparable results but the first approach is two orders of magnitude faster. We show how the various contributions (static/dynamic disorder, intra-/inter-molecular interactions) sum up to build the total broadening observed in experiments.
引用
收藏
页码:219 / 244
页数:26
相关论文
共 50 条
  • [1] Characterising spectral lineshapes in water-solvated adenine from first-principles
    Segarra-Marti, Javier
    Segatta, Francesco
    Mackenzie, Tristan
    Nenov, Artur
    Rivalta, Ivan
    Garavelli, Marco
    Bearpark, Michael
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [2] Water from first principles
    Stone, Anthony J.
    SCIENCE, 2007, 315 (5816) : 1228 - 1229
  • [3] Tailoring the lineshapes of coupled plasmonic systems based on a theory derived from first principles
    Lin, Jing
    Qiu, Meng
    Zhang, Xiyue
    Guo, Huijie
    Cai, Qingnan
    Xiao, Shiyi
    He, Qiong
    Zhou, Lei
    LIGHT-SCIENCE & APPLICATIONS, 2020, 9 (01)
  • [4] Tailoring the lineshapes of coupled plasmonic systems based on a theory derived from first principles
    Jing Lin
    Meng Qiu
    Xiyue Zhang
    Huijie Guo
    Qingnan Cai
    Shiyi Xiao
    Qiong He
    Lei Zhou
    Light: Science & Applications, 9
  • [5] Simulating X-ray Absorption Spectroscopy in Challenging Environments: Methodological Insights from Water-Solvated Ammonia and Ammonium Systems
    Larsson, Ernst Dennis
    Jorgensen, Frederik Kamper
    Reinholdt, Peter
    Hedegard, Erik Donovan
    Kongsted, Jacob
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2024, 20 (09) : 3406 - 3412
  • [6] MODELING MECHANOCHEMISTRY FROM FIRST PRINCIPLES
    Kulik, Heather J.
    REVIEWS IN COMPUTATIONAL CHEMISTRY, VOL 31, 2019, 31 : 265 - 311
  • [7] Structure, Dynamics, and Spectral Diffusion of Water from First-Principles Molecular Dynamics
    Bankura, Arindam
    Karmakar, Anwesa
    Carnevale, Vincenzo
    Chandra, Amalendu
    Klein, Michael L.
    JOURNAL OF PHYSICAL CHEMISTRY C, 2014, 118 (50): : 29401 - 29411
  • [8] Vibrational spectral diffusion and hydrogen bond dynamics in heavy water from first principles
    Mallik, Bhabani S.
    Semparithi, A.
    Chandra, Amalendu
    JOURNAL OF PHYSICAL CHEMISTRY A, 2008, 112 (23): : 5104 - 5112
  • [9] Water potential from first principles
    Babin, Volodymyr
    Paesani, Francesco
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2014, 247
  • [10] Communication: Electronic structure of the solvated chloride anion from first principles molecular dynamics
    Zhang, Cui
    Tuan Anh Pham
    Gygi, Francois
    Galli, Giulia
    JOURNAL OF CHEMICAL PHYSICS, 2013, 138 (18):