IR-UV ion-dip spectroscopy of N-benzylformamide clusters:: Stepwise hydration of a model peptide

被引:48
|
作者
Robertson, EG [1 ]
Hockridge, MR [1 ]
Jelfs, PD [1 ]
Simons, JP [1 ]
机构
[1] Phys & Theoret Chem Lab, Oxford OX1 3QZ, England
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2000年 / 104卷 / 50期
关键词
D O I
10.1021/jp002788d
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Fluorescence excitation, resonant two-photon ionization (R2PI) and IR-UV ion dip spectroscopy have been used to study conformers of N-benzylformamide (NBFA) and associated clusters including hydrates with up to n = 3 water molecules. The most stable conformer has a trans arrangement of the HNCO atoms. It is distinguished from the cis conformer by a higher frequency for the NH stretch (3478 cm(-1), compared to 3443 cm(-1)) and lower frequency for the amide I overtone (3435 cm(-1), compared to 3465 cm(-1)). The cis conformer forms cyclic H-bonded structures with one or two water molecules, binding via strong H-bonds to the neighboring C=O and NH groups. With the addition of a third water molecule, the cyclic water trimer binds to both these groups in preference to a linear chain of three waters. For trans-NBFA, a single water binds to the carbonyl group and is further stabilized by dispersive CH . . .O-water interactions. Two water molecules bind to the NH group instead and form a bridge to the, pi -system of the aromatic ring. A heterodimer species is also observed, composed of cis- and trans-NBFA. It is stabilized by NHtrans. . .O=C-cis and NHcis. . . pi (trans) H-bonds, which give rise to shifts in the NH stretch frequency of -102 and -28 cm(-1), respectively. Flexibility of the amide side chain plays a key role in promoting additional CH . . .O-water interactions in these clusters. When compared to the unsolvated conformers, some of the clusters exhibit considerable distortion in the dihedral angle tau (1) (C2C1CalphaN) and in tau (2) (C1CalphaNC), equivalent to the Ramachandran angle phi in proteins. Solvation also affects the photophysics of NBFA, as the clusters show normal fluorescence behavior while the SI states of the isolated molecules are affected by a competing, nonfluorescent decay process.
引用
收藏
页码:11714 / 11724
页数:11
相关论文
共 23 条
  • [1] IR-UV ion-dip spectroscopy of N-phenyl formamide, and its hydrated clusters
    Robertson, EG
    CHEMICAL PHYSICS LETTERS, 2000, 325 (1-3) : 299 - 307
  • [2] Conformations of 2-phenylethanol and its singly hydrated complexes: UV-UV and IR-UV ion-dip spectroscopy
    Mons, M
    Robertson, EG
    Snoek, LC
    Simons, JP
    CHEMICAL PHYSICS LETTERS, 1999, 310 (5-6) : 423 - 432
  • [3] Probing the glycosidic linkage:: UV and IR ion-dip spectroscopy of a lactoside
    Jockusch, RA
    Kroemer, RT
    Talbot, FO
    Snoek, LC
    Çarçabal, P
    Simons, JP
    Havenith, M
    Bakker, JM
    Compagnon, I
    Meijer, G
    von Helden, G
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (18) : 5709 - 5714
  • [4] Gas-Phase Peptide Structures Unraveled by Far-IR Spectroscopy: Combining IR-UV Ion-Dip Experiments with Born-Oppenheimer Molecular Dynamics Simulations
    Jaeqx, Sander
    Oomens, Jos
    Cimas, Alvaro
    Gaigeot, Marie-Pierre
    Rijs, Anouk M.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (14) : 3663 - 3666
  • [5] IR-UV ion-depletion and fluorescence spectroscopy of 2-phenylacetamide clusters: hydration of a primary amide
    Robertson, EG
    Hockridge, MR
    Jelfs, PD
    Simons, JP
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2001, 3 (05) : 786 - 795
  • [6] PROBING HYDROGEN-BONDING IN BENZENE-(WATER)(N) CLUSTERS USING RESONANT ION-DIP IR SPECTROSCOPY
    PRIBBLE, RN
    ZWIER, TS
    FARADAY DISCUSSIONS, 1994, 97 : 229 - 241
  • [7] Cooperativity of hydrogen-bonded networks in 7-azaindole(CH3OH)n (n=2,3) clusters evidenced by IR-UV ion-dip spectroscopy and natural bond orbital analysis
    Sakota, Kenji
    Kageura, Yutaka
    Sekiya, Hiroshi
    JOURNAL OF CHEMICAL PHYSICS, 2008, 129 (05):
  • [8] Resonant ion-dip infrared spectroscopy of benzene-(solvent)(n) clusters.
    Pribble, RN
    Gruenloh, C
    Zwier, TS
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1996, 211 : 176 - PHYS
  • [9] Intra- and intermolecular π-type hydrogen bonding in aryl alcohols:: UV and IR-UV ion dip spectroscopy
    Mons, M
    Robertson, EG
    Simons, JP
    JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (07): : 1430 - 1437
  • [10] Far-IR Absorption of Neutral Polycyclic Aromatic Hydrocarbons (PAHs): Light on the Mechanism of IR-UV Ion Dip Spectroscopy
    Lemmens, Alexander K.
    Rap, Daniel B.
    Thunnissen, Johannes M. M.
    Gruet, Sebastien
    Steber, Amanda L.
    Panchagnula, Sanjana
    Tielens, Alexander G. G. M.
    Schnell, Melanie
    Buma, Wybren Jan
    Rijs, Anouk M.
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2020, 11 (21): : 8997 - 9002