AAindex: Amino Acid Index Database

被引：244
|
作者：
Kawashima, S [1 ]
Ogata, H [1 ]
Kanehisa, M [1 ]
机构：
[1] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan
来源：
NUCLEIC ACIDS RESEARCH | 1999年 / 27卷 / 01期
关键词：
D O I：
10.1093/nar/27.1.368
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AAindex1 for the amino acid index of 20 numerical values and AAindex2 for the amino acid mutation matrix of 210 numerical values, Each entry of either AAindex1 or AAindex2 consists of the definition, the reference information, a list of related entries in terms of the correlation coefficient, and the actual data. The database may be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.ad.jp/dbget/) or may be downloaded by anonymous FTP (ftp://ftp.genome.ad.jp/db/genomenet/aaindex/).
引用
收藏
页码：368 / 369
页数：2
相关论文
共 50 条
  • [1] AAindex: Amino acid index database
    Kawashima, S
    Kanehisa, M
    NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 374 - 374
  • [2] AAindex: amino acid index database, progress report 2008
    Kawashima, Shuichi
    Pokarowski, Piotr
    Pokarowska, Maria
    Kolinski, Andrzej
    Katayama, Toshiaki
    Kanehisa, Minoru
    NUCLEIC ACIDS RESEARCH, 2008, 36 : D202 - D205
  • [3] Prediction of Thermostability of Enzymes Based on the Amino Acid Index (AAindex) Database and Machine Learning
    Li, Gaolin
    Jia, Lili
    Wang, Kang
    Sun, Tingting
    Huang, Jun
    MOLECULES, 2023, 28 (24):
  • [4] A Multivariate Clustering of AAindex Database for Protein Numerical Representation
    Forghani, Majid
    Khani, Rouhollah
    2017 3RD IRANIAN CONFERENCE ON SIGNAL PROCESSING AND INTELLIGENT SYSTEMS (ICSPIS), 2017, : 1 - 4
  • [5] Subcellular localization prediction of apoptosis proteins based on the data mining for amino acid index database
    Shi, Zhuo-xing
    Dai, Qi
    He, Ping-an
    Yao, Yu-hua
    Liao, Bo
    2013 7TH INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY (ISB), 2013, : 43 - 48
  • [6] ProtRepeatsDB: a database of amino acid repeats in genomes
    Kalita, Mridul K.
    Ramasamy, Gowthaman
    Duraisamy, Sekhar
    Chauhan, Virander S.
    Gupta, Dinesh
    BMC BIOINFORMATICS, 2006, 7 (1)
  • [7] Development of an amino acid composition database and estimation of amino acid intake in Japanese adults
    Suga, Hitomi
    Murakami, Kentaro
    Sasaki, Satoshi
    ASIA PACIFIC JOURNAL OF CLINICAL NUTRITION, 2013, 22 (02) : 188 - 199
  • [8] ProtRepeatsDB: a database of amino acid repeats in genomes
    Mridul K Kalita
    Gowthaman Ramasamy
    Sekhar Duraisamy
    Virander S Chauhan
    Dinesh Gupta
    BMC Bioinformatics, 7
  • [9] YAAM: Yeast Amino Acid Modifications Database
    Ledesma, Leonardo
    Sandoval, Eduardo
    Cruz-Martinez, Uriel
    Maria Escalante, Ana
    Mejia, Selene
    Moreno-Alvarez, Paola
    Avila, Emiliano
    Garcia, Erik
    Coello, Gerardo
    Torres-Quiroz, Francisco
    DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2018,
  • [10] AANT: the Amino Acid-Nucleotide Interaction Database
    Hoffman, MM
    Khrapov, MA
    Cox, JC
    Yao, JC
    Tong, LN
    Ellington, AD
    NUCLEIC ACIDS RESEARCH, 2004, 32 : D174 - D181
12345