Characterization of complete chloroplast genome and phylogenetic analysis of sweet cherry Cerasus avium (L.) Moench (Prunoideae, Rosaceae)

被引：6

作者：

Chen, Tao ^{[1
]}

Hu, Guo-Ping ^{[1
]}

Wang, Yan ^{[2
]}

Chen, Qing ^{[1
]}

Wang, Lei ^{[1
]}

Zhang, Jing ^{[1
]}

Tang, Hao-Ru ^{[1
]}

Wang, Xiao-Rong ^{[1
,2
]}

机构：

[1] Sichuan Agr Univ, Coll Hort, Chengdu, Sichuan, Peoples R China

[2] Sichuan Agr Univ, Inst Pomol & Olericulture, Chengdu, Sichuan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Cerasus avium; chloroplast genome; Illumina sequencing; phylogenetic analysis; PRUNUS; MADDENIA;

D O I：

10.1080/23802359.2018.1532835

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Sweet cherry (Cerasus avium (L.) Moench) belonging to family Rosaceae, is an important economical fruit crop worldwide. In this study, the complete chloroplast (cp) genome of sweet cherry was generated by De novo assembly with low coverage whole-genome sequencing data. The genome size was 157,987bp in length consisting of a typical quadripartite structure; a large single-copy region (LSC, 85,975bp), a small single-copy region (SSC, 19,121bp) and a pair of inverted repeat regions (IRs, 26,445bp each). A total of 115 genes were predicted including 82 protein-coding genes, 29 tRNA genes and four rRNA genes. Phylogenetic analysis based on 12 reported complete chloroplast genome indicated the monophyly of the genus Creasus including newly sequenced C. avium, which is conform to the traditional classification.

引用

页码：1274 / 1275

页数：2

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