The size of the binding pocket of a nitrilase from Rhodococcus sp. 409 has beer: probed with 25 compounds and a basic active site model of potential predictive value has been established delineating the minimum pocket dimensions within a 4 Angstrom distance from the nitrile nitrogen atom. The total volume of this section of the model comprises 227.9 Angstrom(3). Differential volume calculations were found to be indicative for hydrolysis and consistently, SYBYL CoMFA steric field reflects 70% of explained variance.
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Toyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, JapanToyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, Japan
Kato, Y
Ooi, R
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Toyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, JapanToyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, Japan
Ooi, R
Asano, Y
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Toyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, JapanToyama Prefectural Univ, Fac Engn, Biotechnol Res Ctr, Toyama 9390398, Japan
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RIKEN, Maeda Bioengn Lab, Wako, Saitama 3510198, Japan
Saitama Univ, Dept Engn, Sakura Ku, Saitama 3388570, JapanRIKEN, Maeda Bioengn Lab, Wako, Saitama 3510198, Japan
Taniguchi, Kayoko
Murata, Kensuke
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Tokyo Univ Agr & Technol, Dept Biotechnol & Life Sci, Grad Sch Engn, Koganei, Tokyo 1848588, JapanRIKEN, Maeda Bioengn Lab, Wako, Saitama 3510198, Japan
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Tokyo Univ Agr & Technol, Dept Biotechnol & Life Sci, Grad Sch Engn, Koganei, Tokyo 1848588, JapanRIKEN, Maeda Bioengn Lab, Wako, Saitama 3510198, Japan
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Univ British Columbia, Dept Microbiol & Immunol, Inst Life Sci, Vancouver, BC V6T 1Z3, CanadaUniv British Columbia, Dept Microbiol & Immunol, Inst Life Sci, Vancouver, BC V6T 1Z3, Canada
Okamoto, Sachi
Eltis, Lindsay D.
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Univ British Columbia, Dept Microbiol & Immunol, Inst Life Sci, Vancouver, BC V6T 1Z3, CanadaUniv British Columbia, Dept Microbiol & Immunol, Inst Life Sci, Vancouver, BC V6T 1Z3, Canada