Capturing state-dependent dynamic events of GABAA-receptors: a microscopic look into the structural and functional insights

被引:7
|
作者
Payghan, Pavan V. [1 ]
Bera, Indrani [1 ,3 ]
Bhattacharyya, Dhananjay [2 ]
Ghoshal, Nanda [1 ]
机构
[1] CSIR Indian Inst Chem Biol, Struct Biol & Bioinformat Div, Kolkata 700032, India
[2] Saha Inst Nucl Phys, Computat Sci Div, Kolkata 700064, India
[3] Univ Maryland, Dept Chem & Bimolecular Engn, College Pk, MD 20742 USA
来源
关键词
GABA(A)-Receptor; GABA; pentameric ligand-gated ion channel; molecular dynamics simulations; Inhibitory PostSynaptic Currents; NICOTINIC ACETYLCHOLINE-RECEPTOR; GATED ION CHANNELS; X-RAY-STRUCTURE; GABA(A) RECEPTOR; CONFORMATIONAL-CHANGES; SUBUNIT COMPOSITION; CRYSTAL-STRUCTURE; BINDING POCKET; PROTEIN; PHARMACOLOGY;
D O I
10.1080/07391102.2015.1094410
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The -amino butyric acid type A receptors (GABA(A)-Rs) are the key players in the mammalian brain that meditate fast inhibitory neurotransmission events. The structural integrity of these ligand-gated ion channel controls chloride ion permeability, which in turn monitors important pharmacological functions. Despite ample studies on GABA(A)-Rs, there was a need for a study on full-length receptor structures, devoted to track structure-function correlations based on their dynamic behavior consideration. We have employed molecular dynamics simulations accompanied by other biophysical methods to shed light on sequential and unaddressed questions like How GABA(A)-R structure facilitates the entry of GABA molecules at its two orthosteric binding sites? After entry, what structural features and changes monitor site-wise GABA binding differences? In the same context, what are the roles and responsibilities of loops such as C and F? On physiologically relevant time scales, how open to close state transition occurs? How salt bridges such as E155-R207 and E153-R207 maintain state-dependent C-loop structures? In an attempt, our simulation study unravels the complete course of GABA binding-unbinding pathway. This provides us with the relevant understanding of state-dependent dynamic events of GABA(A)-Rs.
引用
收藏
页码:1818 / 1837
页数:20
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