High-Quality Complete Genome Resource of Plant-Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland

被引:0
|
作者
Czajkowski, Robert [1 ]
Rabalski, Lukasz [2 ]
Kosinski, Maciej [2 ]
de Neergaard, Eigil [3 ]
Harding, Susanne [3 ]
机构
[1] Univ Gdansk, Intercollegiate Fac Biotechnol UG & MUG, Lab Biologically Act Cpds, Antoniego Abrahama 58, PL-80307 Gdansk, Poland
[2] Univ Gdansk, Intercollegiate Fac Biotechnol UG & MUG, Lab Recombinant Vaccines, Antoniego Abrahama 58, PL-80307 Gdansk, Poland
[3] Plant Hlth Greenland, Strandgade 39, DK-3000 Helsingor, Denmark
关键词
adaptation; blackleg; Erwinia carotovora subsp. atroseptica; genomics; microbial ecology; population biology; plant pathogen; potato; CAROTOVORA SUBSP ATROSEPTICA; ERWINIA-CAROTOVORA; SOFTWARE PLATFORM; VIRULENCE; SEQUENCE; BLACKLEG;
D O I
10.1094/MPMI-06-21-0130-A
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Pectobacterium atrosepticum is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato (Solanum tuberosum L.) worldwide. Till present, several P. atrosepticum genomes have been sequenced and characterized in detail; however, all of these genomes have come from P. atrosepticum isolates from plants grown in temperate zones, not from hosts cultivated under different climatic conditions. Herewith, we present the first complete, high-quality genome of the P. atrosepticum strain Green1 isolated from potato plants grown under a subarctic climate in Greenland. The genome of P. atrosepticum strain Green1 consists of one chromosome of 4,959,719 bp, with a GC content of 51% and no plasmids. The genome contains 4,531 annotated features, including 4,179 protein-coding genes, 22 ribosomal RNA genes, 70 transfer RNA genes, 8 non-coding RNA genes, 2 CRISPRs, and 126 pseudogenes. We believe that the information in this first high-quality, complete, closed genome of P. atrosepticum strains isolated from host plants grown in a subarctic agricultural region will provide resources for comparative genomic studies and for analyses targeting climatic adaptation and ecological fitness mechanisms present in P. atrosepticum.
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收藏
页码:1328 / 1333
页数:6
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