Stochastic cluster dynamics of macromolecules

被引：4
|
作者：
Chikishev, AY
Ebeling, W
Netrebko, AV
Netrebko, NV
Romanovsky, YM
SchimanskyGeier, L
机构：
来源：
INTERNATIONAL WORKSHOP ON NONLINEAR DYNAMICS AND STRUCTURES IN BIOLOGY AND MEDICINE: OPTICAL AND LASER TECHNOLOGIES | 1997年 / 3053卷
关键词：
enzyme; active site; molecular dynamics; Sinai billiard; molecular machines; stochastic resonance; Lennard-Jones potential; numeric calculations;
D O I：
10.1117/12.266255
中图分类号：
O43 [光学];
学科分类号：
070207 ; 0803 ;
摘要：
The issues about the behaviour of variant test particles (TP) in 2D potential field with complex relief are studied. The cases with time-dependent parameters of potential field are considered. In particular the mathematical models that are discussed in this paper can describe either the process of penetration of TP (ligand) in active site of the enzyme or proton's transition from one potential pit to another.
引用
收藏
页码：54 / 70
页数：17
相关论文
共 50 条
  • [1] Stochastic cluster dynamics of macromolecules
    Chikishev, AY
    Netrebko, NV
    Romanovsky, YM
    Ebeling, W
    Schimansky-Geier, L
    Netrebko, AV
    INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS, 1998, 8 (05): : 921 - 926
  • [2] Stochastic theory of cluster dynamics
    Pal, L
    PHYSICA STATUS SOLIDI B-BASIC RESEARCH, 1996, 194 (01): : 417 - 431
  • [3] A stochastic finite element model for the dynamics of globular macromolecules
    Oliver, Robin C.
    Read, Daniel J.
    Harlen, Oliver G.
    Harris, Sarah A.
    JOURNAL OF COMPUTATIONAL PHYSICS, 2013, 239 : 147 - 165
  • [4] A SIMPLE STOCHASTIC CLUSTER DYNAMICS - RIGOROUS RESULTS
    MARTINELLI, F
    SCOPPOLA, E
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1991, 24 (13): : 3135 - 3157
  • [5] Equilibrium stochastic dynamics of Poisson cluster ensembles
    Bogachev, L.
    Daletskii, A.
    CONDENSED MATTER PHYSICS, 2008, 11 (02) : 261 - 273
  • [6] Synchronous parallel spatially resolved stochastic cluster dynamics
    Dunn, Aaron
    Dingreville, Remi
    Martinez, Enrique
    Capolungo, Laurent
    COMPUTATIONAL MATERIALS SCIENCE, 2016, 120 : 43 - 52
  • [7] CONFORMATIONAL DYNAMICS OF MACROMOLECULES - NEW DIFFUSION EQUATION WITH INTERNAL VISCOSITY HAVING STOCHASTIC PARAMETERS
    CERF, R
    COMPTES RENDUS HEBDOMADAIRES DES SEANCES DE L ACADEMIE DES SCIENCES SERIE B, 1971, 272 (19): : 1143 - &
  • [8] Rupture dynamics of macromolecules
    Paturej, J. (jpaturej@univ.szczecin.pl), 1600, Springer Verlag (70):
  • [9] CONFORMATION DYNAMICS OF MACROMOLECULES
    LUO, LF
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 1987, 32 (04) : 435 - 450
  • [10] Stochastic fire-diffuse-fire model with realistic cluster dynamics
    Calabrese, Ana
    Fraiman, Daniel
    Zysman, Daniel
    Ponce Dawson, Silvina
    PHYSICAL REVIEW E, 2010, 82 (03):
12345