Genome-Wide Identification and Analysis of Cell Cycle Genes in Birch

被引:2
|
作者
Li, Yijie [1 ]
Chen, Song [1 ]
Liu, Yuhang [1 ]
Huang, Haijiao [1 ]
机构
[1] Northeast Forestry Univ, State Key Lab Tree Genet & Breeding, Harbin 150040, Peoples R China
来源
FORESTS | 2022年 / 13卷 / 01期
基金
中国国家自然科学基金;
关键词
Betula pendula; cell cycle; Cyclin; RNA-seq; RETINOBLASTOMA PROTEIN; DEPENDENT-KINASES; ARABIDOPSIS; CDKB1/1;
D O I
10.3390/f13010120
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Research Highlights: This study identified the cell cycle genes in birch that likely play important roles during the plant's growth and development. This analysis provides a basis for understanding the regulatory mechanism of various cell cycles in Betula pendula Roth. Background and Objectives: The cell cycle factors not only influence cell cycles progression together, but also regulate accretion, division, and differentiation of cells, and then regulate growth and development of the plant. In this study, we identified the putative cell cycle genes in the B. pendula genome, based on the annotated cell cycle genes in Arabidopsis thaliana (L.) Heynh. It can be used as a basis for further functional research. Materials and Methods: RNA-seq technology was used to determine the transcription abundance of all cell cycle genes in xylem, roots, leaves, and floral tissues. Results: We identified 59 cell cycle gene models in the genome of B. pendula, with 17 highly expression genes among them. These genes were BpCDKA.1, BpCDKB1.1, BpCDKB2.1, BpCKS1.2, BpCYCB1.1, BpCYCB1.2, BpCYCB2.1, BpCYCD3.1, BpCYCD3.5, BpDEL1, BpDpa2, BpE2Fa, BpE2Fb, BpKRP1, BpKRP2, BpRb1, and BpWEE1. Conclusions: By combining phylogenetic analysis and tissue-specific expression data, we identified 17 core cell cycle genes in the Betula pendula genome.
引用
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页数:12
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