A Novel Cuprotosis-Related lncRNA Signature Predicts Survival Outcomes in Patients with Glioblastoma

被引:0
|
作者
Sun, Hongyu [1 ]
Li, Xiaohui [1 ]
Yang, Jin [1 ]
Lyu, Yi [1 ]
Han, Pengyong [2 ]
Zheng, Jinping [1 ,3 ]
机构
[1] Shanxi Med Univ, Sch Publ Hlth, Dept Hlth Toxicol, Taiyuan 030001, Peoples R China
[2] Changzhi Med Coll, Changzhi 046000, Shanxi, Peoples R China
[3] Changzhi Med Coll, Ctr Hlth Aging, Collaborat Innovat Ctr Aging Mech Res & Transform, Changzhi 046000, Peoples R China
关键词
GBM; Cuprotosis; lncRNA; Predict model; LONG NONCODING RNA; CYTOR; CANCER;
D O I
10.1007/978-3-031-13829-4_48
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Background: Glioblastoma Multiforme(GBM) is a common malignant neuroepithelial tumor originating from central nervous system and the prognosis is worse. This study aimed to identify potential cuprotosis-related lncRNAs and explore significance of prognostic prediction in GBM. Methods: RNA-seq and related clinical data of GBM were retrieved from TCGA. Univariate, multivariate, lasso and Cox regression analysis were used to screen the cuprotosis-related lncRNA associated with prognosis and established the corresponding risk model. Receiver operating curve (ROC) was used to assess the predictive power of the model. Results: 159 cases (including RNA-seq and related clinical information) were divided into training group (112) and verification group (47). Six prognostic cuprotosis-related lncRNAs (LINC02328, AC005229.4, CYTOR, AC019254.1, DLEU1, GNG12-AS1) were screened. The high-risk group had a poorer prognosis compared with the low-risk group. Kaplan-Meier curves showed that the risk model was a good prognostic indicator (P < 0.001). The ROC analysis showed that the validity of the risk model was good. KEGG and GO enrichment analyses were performed on cuprotosis-related genes. Tumor mutation burden analysis was performed, and the mutation rates of TP53, PTEN, and EGFR were among the top three, and tumor mutation burden was associated with prognosis and survival. Cytolytic activity, T-cell co-stimulation, etc. found among high- and low-risk groups. Cuprotosis-related lncRNAs and genes were explored which can help predict prognosis and explore new therapeutic targets. Conclusion: The expression characteristics of cuprotosis-related lncRNAs in GBM were explored from the TCGA and cuprotosis-related genes, and a prognostic model was constructed to help improve the treatment prognosis of GBM patients and explore new therapeutic targets.
引用
收藏
页码:556 / 568
页数:13
相关论文
共 50 条
  • [1] A Novel Cuprotosis-Related lncRNA Signature Effectively Predicts Prognosis in Glioma Patients
    Wu, Shuaishuai
    Ballah, Augustine K.
    Che, Wenqiang
    Wang, Xiangyu
    JOURNAL OF MOLECULAR NEUROSCIENCE, 2023, 73 (2-3) : 185 - 204
  • [2] A Novel Cuprotosis-Related lncRNA Signature Effectively Predicts Prognosis in Glioma Patients
    Shuaishuai Wu
    Augustine K. Ballah
    Wenqiang Che
    Xiangyu Wang
    Journal of Molecular Neuroscience, 2023, 73 : 185 - 204
  • [3] A Novel Cuprotosis-Related Gene Signature Predicts Survival Outcomes in Patients with Clear-Cell Renal Cell Carcinoma
    Zhan, Zhenrun
    Han, Pengyong
    Bi, Xiaodan
    Yang, Jinpeng
    Zhao, Tingting
    INTELLIGENT COMPUTING THEORIES AND APPLICATION, ICIC 2022, PT II, 2022, 13394 : 260 - 269
  • [4] Cuprotosis-related signature predicts overall survival in clear cell renal cell carcinoma
    Zhang, Fan
    Lin, Junyu
    Feng, Dechao
    Liang, Jiayu
    Lu, Yiping
    Liu, Zhihong
    Wang, Xianding
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
  • [5] A novel Cuprotosis-related signature predicts the prognosis and selects personal treatments for melanoma based on bioinformatics analysis
    Hu, Bingqian
    Hounye, Alphonse Houssou
    Wang, Zheng
    Qi, Min
    Zhang, Jianglin
    FRONTIERS IN ONCOLOGY, 2023, 13
  • [6] A novel prognostic prediction model of cuprotosis-related genes signature in hepatocellular carcinoma
    Shao, Ruo-Nan
    Bai, Kun-Hao
    Huang, Qian-Qian
    Chen, Si-Liang
    Huang, Xin
    Dai, Yu-Jun
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2023, 11
  • [7] Novel cuprotosis-related gene signature: a prognostic indicator and regulator of the glioma immune microenvironment
    Gao, Dongming
    Zhou, Lin
    Bao, Youyuan
    Shi, Wenyin
    Li, Lei
    Gao, Liang
    TRANSLATIONAL CANCER RESEARCH, 2024, 13 (11)
  • [8] A Novel Cuprotosis-Related Gene FDX1 Signature for Overall Survival Prediction in Clear Cell Renal Cell Carcinoma Patients
    Zhang, Wei-Tong
    Gong, Yi-Ming
    Zhang, Chao-Yang
    Pan, Jia-Shan
    Huang, Tao
    Li, Yong-Xiang
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [9] Five cuprotosis-related lncRNA signatures for prognosis prediction in acute myeloid leukaemia
    Wang, Qian
    HEMATOLOGY, 2023, 28 (01)
  • [10] A novel disulfidptosis-related gene signature predicts overall survival of glioblastoma patients
    Zhang, Yuxia
    Liu, Bing
    Zhou, Yuelian
    FUTURE SCIENCE OA, 2024, 10 (01):