NETME: on-the-fly knowledge network construction from biomedical literature

被引：7

作者：

Muscolino, Alessandro ^{[1
]}

Di Maria, Antonio ^{[2
]}

Rapicavoli, Rosaria Valentina ^{[1
]}

Alaimo, Salvatore ^{[2
]}

Bellomo, Lorenzo ^{[4
]}

Billeci, Fabrizio ^{[3
]}

Borzi, Stefano ^{[3
]}

Ferragina, Paolo ^{[4
]}

Ferro, Alfredo ^{[2
]}

Pulvirenti, Alfredo ^{[2
]}

机构：

[1] Univ Catania, Dept Phys & Astron, Catania, Italy

[2] Univ Catania, Dept Clin & Expt Med, Catania, Italy

[3] Univ Catania, Dept Math & Comp Sci, Catania, Italy

[4] Univ Pisa, Dept Comp Sci, Pisa, Italy

来源：

APPLIED NETWORK SCIENCE | 2022年 / 7卷 / 01期

基金：

欧盟地平线“2020”;

关键词：

Network analysis; Knowledge graph; Text mining; CD147; DATABASE; ONTOLOGY; REACTOME; SP1;

D O I：

10.1007/s41109-021-00435-x

中图分类号：

TP301 [理论、方法];

学科分类号：

081202 ;

摘要：

Background The rapidly increasing biological literature is a key resource to automatically extract and gain knowledge concerning biological elements and their relations. Knowledge Networks are helpful tools in the context of biological knowledge discovery and modeling. Results We introduce a novel system called NETME, which, starting from a set of full-texts obtained from PubMed, through an easy-to-use web interface, interactively extracts biological elements from ontological databases and then synthesizes a network inferring relations among such elements. The results clearly show that our tool is capable of inferring comprehensive and reliable biological networks.

引用

页数：24

共 50 条

[1] NETME: on-the-fly knowledge network construction from biomedical literature
Alessandro Muscolino
Antonio Di Maria
Rosaria Valentina Rapicavoli
Salvatore Alaimo
Lorenzo Bellomo
Fabrizio Billeci
Stefano Borzì
Paolo Ferragina
Alfredo Ferro
Alfredo Pulvirenti
Applied Network Science, 7
[2] NetMe 2.0: a web-based platform for extracting and modeling knowledge from biomedical literature as a labeled graph
Di Maria, Antonio
Bellomo, Lorenzo
Billeci, Fabrizio
Cardillo, Alfio
Alaimo, Salvatore
Ferragina, Paolo
Ferro, Alfredo
Pulvirenti, Alfredo
BIOINFORMATICS, 2024, 40 (05)
[3] Query-Driven On-The-Fly Knowledge Base Construction
Dat Ba Nguyen
Abujabal, Abdalghani
Nam Khanh Tran
Theobald, Martin
Weikum, Gerhard
PROCEEDINGS OF THE VLDB ENDOWMENT, 2017, 11 (01): : 66 - 79
[4] On-the-fly snake construction from video
Cetintemel, GD
Burlina, P
1998 INTERNATIONAL CONFERENCE ON IMAGE PROCESSING - PROCEEDINGS, VOL 3, 1998, : 638 - 642
[5] On-The-Fly Service Construction with Prototypes
Mohr, Felix
Wever, Marcel
Hullermeier, Eyke
2018 IEEE INTERNATIONAL CONFERENCE ON SERVICES COMPUTING (IEEE SCC 2018), 2018, : 225 - 232
[6] Knowledge Distillation by On-the-Fly Native Ensemble
Lan, Xu
Zhu, Xiatian
Gong, Shaogang
ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 31 (NIPS 2018), 2018, 31
[7] BioKGrapher: Initial evaluation of automated knowledge graph construction from biomedical literature
Schaefer, Henning
Idrissi-Yaghir, Ahmad
Arzideh, Kamyar
Damm, Hendrik
Pakull, Tabea M. G.
Schmidt, Cynthia S.
Bahn, Mikel
Lodde, Georg
Livingstone, Elisabeth
Schadendorf, Dirk
Nensa, Felix
Horn, Peter A.
Friedrich, Christoph M.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 24 : 639 - 660
[8] Automata Learning with On-the-Fly Direct Hypothesis Construction
Merten, Maik
Howar, Falk
Steffen, Bernhard
Margaria, Tiziana
LEVERAGING APPLICATIONS OF FORMAL METHODS, VERIFICATION, AND VALIDATION, 2012, 336 : 248 - +
[9] Discovering hidden knowledge from biomedical literature
University of Nova Gorica, Vipavska 13, 5000 Nova Gorica, Slovenia
不详
不详
Informatica, 2007, 1 (15-20):
[10] Discovering hidden knowledge from biomedical literature
Petrič, Ingrid
Urbančič, Tanja
Cestnik, Bojan
Informatica (Ljubljana), 2007, 31 (01) : 15 - 20

← 1 2 3 4 5 →