Quasar: Easy Machine Learning for Biospectroscopy

被引:87
|
作者
Toplak, Marko [1 ]
Read, Stuart T. [2 ]
Sandt, Christophe [3 ]
Borondics, Ferenc [3 ]
机构
[1] Univ Ljubljana, Fac Comp & Informat Sci, Vecna Pot 113, SI-1000 Ljubljana, Slovenia
[2] Canadian Light Source Inc, 44 Innovat Blvd, Saskatoon, SK S7N 2V3, Canada
[3] SOLEIL Synchrotron, St Aubin BP 48, F-91192 Gif Sur Yvette, France
基金
加拿大健康研究院; 加拿大自然科学与工程研究理事会; 加拿大创新基金会;
关键词
open source; machine learning; visual programming; data exploration; data analysis;
D O I
10.3390/cells10092300
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Data volumes collected in many scientific fields have long exceeded the capacity of human comprehension. This is especially true in biomedical research where multiple replicates and techniques are required to conduct reliable studies. Ever-increasing data rates from new instruments compound our dependence on statistics to make sense of the numbers. The currently available data analysis tools lack user-friendliness, various capabilities or ease of access. Problem-specific software or scripts freely available in supplementary materials or research lab websites are often highly specialized, no longer functional, or simply too hard to use. Commercial software limits access and reproducibility, and is often unable to follow quickly changing, cutting-edge research demands. Finally, as machine learning techniques penetrate data analysis pipelines of the natural sciences, we see the growing demand for user-friendly and flexible tools to fuse machine learning with spectroscopy datasets. In our opinion, open-source software with strong community engagement is the way forward. To counter these problems, we develop Quasar, an open-source and user-friendly software, as a solution to these challenges. Here, we present case studies to highlight some Quasar features analyzing infrared spectroscopy data using various machine learning techniques.
引用
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页数:10
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