Native proteins are surface-molten solids:: Application of the Lindemann criterion for the solid versus liquid state

被引:143
作者
Zhou, YQ
Vitkup, D
Karplus, M
机构
[1] Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
[2] Brandeis Univ, Dept Biol, Program Biophys, Waltham, MA 02254 USA
[3] Univ Strasbourg, Inst Le Bel, Lab Chim Biophys, F-67000 Strasbourg, France
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
protein thermodynamics; glass transition; internal fluctuations; protein dynamics; phase diagram;
D O I
10.1006/jmbi.1998.2374
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Since the internal motions of proteins play an essential role in their biological function, it is important to characterize them in a fundamental way. The Lindemann criterion for the solid state is applied to molecular dynamics simulations and temperature-dependent X-ray diffraction data of proteins. It is found that the interior of native proteins is solid-like, while their surface is Liquid-like. When the entire protein becomes solidlike at low temperature (similar to 220 K), the protein is inactive. Thus, the surface-molten solid nature of proteins in their native state permits the dynamics required for function, while preserving their stability. Comparison with rare gas clusters and polymer models indicates that their thermodynamic phase diagrams have many elements in common with those of proteins. (C) 1999 Academic Press.
引用
收藏
页码:1371 / 1375
页数:5
相关论文
共 45 条
[1]   DYNAMICS OF CARBON-MONOXIDE BINDING TO PROTOHEME [J].
ALBERDING, N ;
AUSTIN, RH ;
CHAN, SS ;
EISENSTEIN, L ;
FRAUENFELDER, H ;
GUNSALUS, IC ;
NORDLUND, TM .
JOURNAL OF CHEMICAL PHYSICS, 1976, 65 (11) :4701-4711
[2]   CRYSTALLOGRAPHIC STUDIES OF THE DYNAMIC PROPERTIES OF LYSOZYME [J].
ARTYMIUK, PJ ;
BLAKE, CCF ;
GRACE, DEP ;
OATLEY, SJ ;
PHILLIPS, DC ;
STERNBERG, MJE .
NATURE, 1979, 280 (5723) :563-568
[3]   Melting and freezing phenomena [J].
Berry, RS .
MICROSCALE THERMOPHYSICAL ENGINEERING, 1997, 1 (01) :1-18
[4]   DYNAMICS AT THE SOLID LIQUID TRANSITION - EXPERIMENTS AT THE FREEZING-POINT [J].
BILGRAM, JH .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 1987, 153 (01) :1-89
[5]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[6]  
Brooks C. L., 1988, PROTEINS THEORETICAL
[7]   ACID AND THERMAL-DENATURATION OF BARNASE INVESTIGATED BY MOLECULAR-DYNAMICS SIMULATIONS [J].
CAFLISCH, A ;
KARPLUS, M .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (05) :672-708
[8]   THE RELATION BETWEEN THE DIVERGENCE OF SEQUENCE AND STRUCTURE IN PROTEINS [J].
CHOTHIA, C ;
LESK, AM .
EMBO JOURNAL, 1986, 5 (04) :823-826
[9]   Structural determinants in the sequences of immunoglobulin variable domain [J].
Chothia, C ;
Gelfand, I ;
Kister, A .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 278 (02) :457-479
[10]   MULTIPLE CONFORMATIONAL STATES OF PROTEINS - A MOLECULAR-DYNAMICS ANALYSIS OF MYOGLOBIN [J].
ELBER, R ;
KARPLUS, M .
SCIENCE, 1987, 235 (4786) :318-321