Computing parallel/coincident phase D-brane superpotentials and Type-II/F-theory duality

In this paper we study the parallel phase and the coincident phase of D-brane systems with the compactification of one closed modulus. D-brane systems with two phases are described by different 4-folds in terms of Type-II/F-theory duality, and the phase transitions are related by the blow-up from a 4-fold with singularities to a 4-fold without. In terms of gauge theory, the phase transition corresponds to the enhancement of gauge group U(1) x U(1)-> U(2) connecting the Coulomb branch and the Higgs branch. For the sextic and octic with two D-branes, using mirror symmetry and Type-II/F theory duality, A-model superpotentials are obtained from the B-model side for the two phases, and the U(1) Ooguri-Vafa invariants for the parallel phase and U(2) Ooguri-Vafa invariants for the coincident phase are extracted from the A-model superpotential. The difference between the invariants of the two phases is evidence of the phase transition between the Coulomb branch and the Higgs branch.