A DNA barcode library for Korean Chironomidae (Insecta: Diptera) and indexes for defining barcode gap

被引:21
|
作者
Kim, Sungmin [2 ]
Song, Kyo-Hong [3 ]
Ree, Han-Il [4 ,5 ]
Kim, Won [1 ]
机构
[1] Seoul Natl Univ, Sch Biol Sci, Seoul 151747, South Korea
[2] Seoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul 151747, South Korea
[3] Natl Inst Biol Resources, Wildlife Genet Resources Ctr, Inchon 404708, South Korea
[4] Yonsei Univ, Coll Med, Inst Trop Med, Dept Environm Med Biol, Seoul 120752, South Korea
[5] Yonsei Univ, Coll Med, Korean Natl Arthropods Med Importance Resource Ba, Seoul 120752, South Korea
关键词
chironomidae; DNA barcode gap; DNA barcode library; DNA barcoding; reverse taxonomy; MITOCHONDRIAL PSEUDOGENES; NUCLEOTIDE SUBSTITUTIONS; TAXONOMY; IDENTIFICATION; NUMBER; LARVAE; TOOL; DIVERSITY; UTILITY; RATES;
D O I
10.1007/s10059-012-2151-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Non-biting midges (Diptera: Chironomidae) are a diverse population that commonly causes respiratory allergies in humans. Chironomid larvae can be used to indicate freshwater pollution, but accurate identification on the basis of morphological characteristics is difficult. In this study, we constructed a mitochondrial cytochrome c oxidase subunit I (COI)-based DNA barcode library for Korean chironomids. This library consists of 211 specimens from 49 species, including adults and unidentified larvae. The interspecies and intraspecies COI sequence variations were analyzed. Sophisticated indexes were developed in order to properly evaluate indistinct barcode gaps that are created by insufficient sampling on both the interspecies and intraspecies levels and by variable mutation rates across taxa. In a variety of insect datasets, these indexes were useful for re-evaluating large barcode datasets and for defining COI barcode gaps. The COI-based DNA barcode library will provide a rapid and reliable tool for the molecular identification of Korean chironomid species. Furthermore, this reverse-taxonomic approach will be improved by the continuous addition of other speceis' sequences to the library.
引用
收藏
页码:9 / 17
页数:9
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