Recent updates and developments to plant genome size databases

被引:46
|
作者
Garcia, Sonia [1 ]
Leitch, Ilia J. [2 ]
Anadon-Rosell, Alba [3 ]
Canela, Miguel A. [4 ]
Galvez, Francisco [5 ]
Garnatje, Teresa [6 ]
Gras, Airy [1 ]
Hidalgo, Oriane [1 ,2 ]
Johnston, Emmeline [2 ]
Mas de Xaxars, Gemma [1 ]
Pellicer, Jaume [2 ]
Siljak-Yakovlev, Sonja [7 ]
Valles, Joan [1 ]
Vitales, Daniel [1 ]
Bennett, Michael D. [2 ]
机构
[1] Univ Barcelona, Fac Farm, CSIC, Lab Bot,Unitat Associada, E-08028 Barcelona, Catalonia, Spain
[2] Royal Bot Gardens, Jodrell Lab, Richmond TW9 3AB, Surrey, England
[3] Univ Barcelona, Fac Biol, Dept Biol Vegetal, E-08028 Barcelona, Catalonia, Spain
[4] Univ Navarra, IESE Business Sch, Dept Managerial Decis Sci, Barcelona 08032, Catalonia, Spain
[5] BioScripts Ctr Invest & Desarrollo Recursos Cient, Seville 41012, Andalusia, Spain
[6] CSIC ICUB, Inst Bot Barcelona, Barcelona 08038, Catalonia, Spain
[7] Univ Paris 11, UMR8079, CNRS UPS AgroParis Tech, Lab Evolut & Systemat, F-91405 Orsay, France
关键词
NUCLEAR-DNA AMOUNTS; NOYAU CELLULAIRE; C-VALUE; ASTERACEAE; EVOLUTION; GENERA; ANGIOSPERMS; PROGRESS; DESOXYRIBONUCLEIQUE; DIVERSIFICATION;
D O I
10.1093/nar/gkt1195
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Two plant genome size databases have been recently updated and/or extended: the Plant DNA C-values database (http://data.kew.org/cvalues), and GSAD, the Genome Size in Asteraceae database (http://www.asteraceaegenomesize.com). While the first provides information on nuclear DNA contents across land plants and some algal groups, the second is focused on one of the largest and most economically important angiosperm families, Asteraceae. Genome size data have numerous applications: they can be used in comparative studies on genome evolution, or as a tool to appraise the cost of whole-genome sequencing programs. The growing interest in genome size and increasing rate of data accumulation has necessitated the continued update of these databases. Currently, the Plant DNA C-values database (Release 6.0, Dec. 2012) contains data for 8510 species, while GSAD has 1219 species (Release 2.0, June 2013), representing increases of 17 and 51%, respectively, in the number of species with genome size data, compared with previous releases. Here we provide overviews of the most recent releases of each database, and outline new features of GSAD. The latter include (i) a tool to visually compare genome size data between species, (ii) the option to export data and (iii) a webpage containing information about flow cytometry protocols.
引用
收藏
页码:D1159 / D1166
页数:8
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