Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia

被引:15
|
作者
Siraj, Amir S. [1 ,2 ]
Rodriguez-Barraquer, Isabel [3 ]
Barker, Christopher M. [4 ]
Tejedor-Garavito, Natalia [5 ,6 ]
Harding, Dennis [7 ]
Lorton, Christopher [7 ]
Lukacevic, Dejan [7 ]
Oates, Gene [7 ]
Espana, Guido [1 ,2 ]
Kraemer, Moritz U. G. [8 ,9 ,10 ]
Manore, Carrie [11 ]
Johansson, Michael A. [12 ,13 ]
Tatem, Andrew J. [5 ,6 ]
Reiner, Robert C. [14 ,15 ]
Perkins, T. Alex [1 ,2 ]
机构
[1] Univ Notre Dame, Dept Biol Sci, 345 Galvin Hall, Notre Dame, IN 46556 USA
[2] Univ Notre Dame, Eck Inst Global Hlth, 345 Galvin Hall, Notre Dame, IN 46556 USA
[3] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Epidemiol, 615 N Wolfe St, Baltimore, MD 21205 USA
[4] Univ Calif Davis, Dept Pathol Microbiol & Immunol, 5329 Vet Med 3A, Davis, CA 95616 USA
[5] Univ Southampton, Dept Geog & Environm, WorldPop, Univ Rd, Southampton SO17 1BJ, Hants, England
[6] Flowminder Fdn, Roslagsgatan 17, SE-11355 Stockholm, Sweden
[7] Inst Dis Modeling, 3150 139th Ave SE, Bellevue, WA 31509 USA
[8] Univ Oxford, Dept Zool, Spatial Ecol & Epidemiol Grp, South Parks Rd, Oxford OX1 3PS, England
[9] Harvard Med Sch, 10 Shattuck St, Boston, MA 02115 USA
[10] Boston Childrens Hosp, 300 Longwood Ave, Boston, MA 02115 USA
[11] Los Alamos Natl Lab, Theoret Biol & Biophys Grp, Los Alamos, NM 87545 USA
[12] Ctr Dis Control & Prevent, 1324 Calle Canada, San Juan, PR 00920 USA
[13] Harvard TH Chan Sch Publ Hlth, Ctr Communicable Dis Dynam, 677 Huntington Ave,Suite 506, Boston, MA 02115 USA
[14] Univ Washington, Dept Global Hlth, 2301 Fifth Ave,Suite 600, Seattle, WA 98121 USA
[15] Univ Washington, Inst Hlth Metr & Evaluat, 2301 Fifth Ave,Suite 600, Seattle, WA 98121 USA
基金
美国国家科学基金会;
关键词
VIRUS OUTBREAK; TRANSMISSION; STATES; WOMEN; MODEL;
D O I
10.1038/sdata.2018.73
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Despite a long history of mosquito-borne virus epidemics in the Americas, the impact of the Zika virus (ZIKV) epidemic of 2015-2016 was unexpected. The need for scientifically informed decision-making is driving research to understand the emergence and spread of ZIKV. To support that research, we assembled a data set of key covariates for modeling ZIKV transmission dynamics in Colombia, where ZIKV transmission was widespread and the government made incidence data publically available. On a weekly basis between January 1, 2014 and October 1, 2016 at three administrative levels, we collated spatiotemporal Zika incidence data, nine environmental variables, and demographic data into a single downloadable database. These new datasets and those we identified, processed, and assembled at comparable spatial and temporal resolutions will save future researchers considerable time and effort in performing these data processing steps, enabling them to focus instead on extracting epidemiological insights from this important data set. Similar approaches could prove useful for filling data gaps to enable epidemiological analyses of future disease emergence events.
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页数:11
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