Conceptual DFT-Based Computational Peptidology of Marine Natural Compounds: Discodermins A-H

被引:34
|
作者
Flores-Holguin, Norma [1 ]
Frau, Juan [2 ]
Glossman-Mitnik, Daniel [1 ]
机构
[1] Ctr Invest Mat Avanzados, Dept Medio Ambiente & Energia, Lab Virtual NANOCOSMOS, Chihuahua 31136, Chih, Mexico
[2] Univ Illes Balears, Dept Quim, E-07122 Palma De Malllorca, Spain
来源
MOLECULES | 2020年 / 25卷 / 18期
关键词
Discodermins A-H; Chemical Reactivity Theory; Conceptual DFT; Global and Local Reactivity Descriptors; pKa; Bioavailability; Bioactivity scores; ADME; MOLECULAR-FORCE FIELD; DUAL DESCRIPTOR; DENSITY FUNCTIONALS; LOCAL REACTIVITY; BASIS-SETS; EXCITATIONS; ENERGIES; PREDICT; INDEX;
D O I
10.3390/molecules25184158
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A methodology based on the concepts that arise from Density Functional Theory named Conceptual Density Functional Theory (CDFT) was chosen for the calculation of some global and local reactivity descriptors of the Discodermins A-H family of marine peptides through the consideration of the KID (Koopmans in DFT) technique that was successfully used in previous studies of this kind of molecular systems. The determination of active sites of the studied molecules for different kinds of reactivities was achieved by resorting to some CDFT-based descriptors like the Fukui functions as well as the Parr functions derived from Molecular Electron Density Theory (MEDT). A few properties identified with their ability to behave as a drug and the bioactivity of the peptides considered in this examination were acquired by depending on a homology model by studying the correlation with the known bioactivity of related molecules in their interaction with various biological receptors. With the further object of analyzing their bioactivity, some parameters of usefulness for future QSAR studies, their predicted biological targets, and the ADME (Absorption, Distribution, Metabolism, and Excretion) parameters related to the Discodermins A-H pharmacokinetics are also reported.
引用
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页数:20
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