Developing a modular architecture for creation of rule-based clinical diagnostic criteria

被引:1
|
作者
Hong, Na [1 ,2 ]
Pathak, Jyotishman [3 ]
Chute, Christopher G. [4 ]
Jiang, Guoqian [1 ]
机构
[1] Mayo Clin, Dept Hlth Sci Res, 200 First St,SW, Rochester, MN 55905 USA
[2] Chinese Acad Med Sci, Inst Med Informat, Beijing, Peoples R China
[3] Cornell Univ, Weill Cornell Med Coll, New York, NY 10021 USA
[4] Johns Hopkins Univ, Sch Med, Baltimore, MD USA
来源
BIODATA MINING | 2016年 / 9卷
关键词
Diagnostic Criteria; Ontology; ICD-11; QDM; SWRL; ELIGIBILITY CRITERIA; GUIDELINES; REPRESENTATION; CHALLENGES; ONTOLOGY; SUPPORT;
D O I
10.1186/s13040-016-0113-5
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: With recent advances in computerized patient records system, there is an urgent need for producing computable and standards-based clinical diagnostic criteria. Notably, constructing rule-based clinical diagnosis criteria has become one of the goals in the International Classification of Diseases (ICD)-11 revision. However, few studies have been done in building a unified architecture to support the need for diagnostic criteria computerization. In this study, we present a modular architecture for enabling the creation of rule-based clinical diagnostic criteria leveraging Semantic Web technologies. Methods and results: The architecture consists of two modules: an authoring module that utilizes a standards-based information model and a translation module that leverages Semantic Web Rule Language (SWRL). In a prototype implementation, we created a diagnostic criteria upper ontology (DCUO) that integrates ICD-11 content model with the Quality Data Model (QDM). Using the DCUO, we developed a transformation tool that converts QDM-based diagnostic criteria into Semantic Web Rule Language (SWRL) representation. We evaluated the domain coverage of the upper ontology model using randomly selected diagnostic criteria from broad domains (n = 20). We also tested the transformation algorithms using 6 QDM templates for ontology population and 15 QDM-based criteria data for rule generation. As the results, the first draft of DCUO contains 14 root classes, 21 subclasses, 6 object properties and 1 data property. Investigation Findings, and Signs and Symptoms are the two most commonly used element types. All 6 HQMF templates are successfully parsed and populated into their corresponding domain specific ontologies and 14 rules (93.3 %) passed the rule validation. Conclusion: Our efforts in developing and prototyping a modular architecture provide useful insight into how to build a scalable solution to support diagnostic criteria representation and computerization.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Developing a modular architecture for creation of rule-based clinical diagnostic criteria
    Na Hong
    Jyotishman Pathak
    Christopher G. Chute
    Guoqian Jiang
    BioData Mining, 9
  • [2] A novel modular neural architecture for rule-based and similarity-based reasoning
    Bogacz, R
    Giraud-Carrier, C
    HYBRID NEURAL SYSTEMS, 2000, 1778 : 63 - 77
  • [3] EcgRuleML: A Rule-Based Markup Language for Describing Diagnostic ECG Criteria
    Bond, R. R.
    Finlay, D. D.
    Nugent, C. D.
    Moore, G.
    COMPUTING IN CARDIOLOGY 2010, VOL 37, 2010, 37 : 217 - 220
  • [4] jcel: A modular rule-based reasoner
    Mendez, Julian
    CEUR Workshop Proceedings, 2012, 858
  • [5] A Modular System for Rule-based Text Categorisation
    Del Tredici, Marco
    Nissim, Malvina
    LREC 2014 - NINTH INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION, 2014,
  • [6] FOUNDATIONS OF RULE-BASED DESIGN OF MODULAR SYSTEMS
    PARISIPRESICCE, F
    THEORETICAL COMPUTER SCIENCE, 1991, 83 (01) : 131 - 155
  • [7] Creation, deployment, and execution of rule-based services
    Radusch, I
    Arbanowski, S
    Steglich, S
    Popescu-Zeletin, R
    ISADS 2005: INTERNATIONAL SYMPOSIUM ON AUTONOMOUS DECENTRALIZED SYSTEMS,PROCEEDINGS, 2005, : 397 - 404
  • [8] Rule-based diagnostic system fusion
    Zemirline, A.
    Lecornu, L.
    Solaiman, B.
    2007 PROCEEDINGS OF THE 10TH INTERNATIONAL CONFERENCE ON INFORMATION FUSION, VOLS 1-4, 2007, : 1791 - 1797
  • [9] Knowledge Services Using Rule-Based Formalization for Eligibility Criteria of Clinical Trials
    Huang, Zhisheng
    Hu, Qing
    ten Teije, Annette
    van Harmelen, Frank
    Ait-Mokhtar, Salah
    HEALTH INFORMATION SCIENCE, HIS 2016, 2016, 10038 : 49 - 61
  • [10] A modular rule-based visual interactive creation of tree-shaped geo-located networks
    Brodkorb, Felix
    Kopp, Manuel
    Kuijper, Arjan
    von Landesberger, Tatiana
    2016 12TH INTERNATIONAL CONFERENCE ON SIGNAL-IMAGE TECHNOLOGY & INTERNET-BASED SYSTEMS (SITIS), 2016, : 397 - 403