MATCHING TWO-DIMENSIONAL GEL ELECTROPHORESIS' SPOTS

被引:0
|
作者
dos Anjos, Antonio [1 ]
Ersboll, Bjarne Kjaer [2 ]
Al-Tam, Faroq [1 ]
Shahbazkia, Hamid Reza [1 ]
机构
[1] Univ Algarve, Dept Elect & Informat Engn, Faro, Portugal
[2] Tech Univ Denmark, Dept Informat & Math Modelling, Lyngby, Denmark
关键词
2-D Electrophoresis; Matching; Registration;
D O I
10.5220/0003702401110117
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
This paper describes an approach for matching Two-Dimensional Electrophoresis (2-DE) gels' spots, involving the use of image registration. The number of false positive matches produced by the proposed approach is small, when compared to academic and commercial state-of-the-art approaches. This article contributes to solving one of the greatest bottlenecks in the 2-DE analysis pipeline.
引用
收藏
页码:111 / 117
页数:7
相关论文
共 50 条
  • [1] Segmentation of Two-Dimensional Gel Electrophoresis Images containing Overlapping Spots
    Savelonas, Michalis
    Maroulis, Dimitris
    Mylona, Eleftheria
    2009 9TH INTERNATIONAL CONFERENCE ON INFORMATION TECHNOLOGY AND APPLICATIONS IN BIOMEDICINE, 2009, : 148 - 151
  • [2] Two-in-one gel for spot matching after two-dimensional electrophoresis
    Wang, YY
    Cheung, PY
    Wong, MS
    Lo, SCL
    PROTEOMICS, 2003, 3 (05) : 580 - 583
  • [3] Two-dimensional gel electrophoresis of Caenorhabditis elegans homogenates and identification of protein spots by microsequencing
    Bini, L
    Heid, H
    Liberatori, S
    Geier, G
    Pallini, V
    Zwilling, R
    ELECTROPHORESIS, 1997, 18 (3-4) : 557 - 562
  • [4] Two-dimensional gel electrophoresis of Caenorhabditis elegans homogenates and identification of protein spots by microsequencing
    Bini, L.
    Heid, H.
    Liberatori, S.
    Geier, G.
    Electrophoresis, 18 (3-4):
  • [5] Treatment of Over-Saturated Protein Spots in Two-Dimensional Electrophoresis Gel Images
    Serackis, Arturas
    Navakauskas, Dalius
    INFORMATICA, 2010, 21 (03) : 409 - 424
  • [6] Statistical models of shape for the analysis of protein spots in two-dimensional electrophoresis gel images
    Rogers, M
    Graham, J
    Tonge, RP
    PROTEOMICS, 2003, 3 (06) : 887 - 896
  • [7] Two-dimensional difference gel electrophoresis
    Viswanathan, Surya
    Uenlue, Mustafa
    Minden, Jonathan S.
    NATURE PROTOCOLS, 2006, 1 (03) : 1351 - 1358
  • [8] Two-dimensional gel electrophoresis of proteins
    不详
    Nature Methods, 2005, 2 (1) : 83 - 84
  • [9] Two-dimensional gel electrophoresis of proteins
    不详
    NATURE METHODS, 2005, 2 (01) : 83 - 84
  • [10] Two-dimensional polyacrylamide gel electrophoresis
    Dunn, MJ
    Corbett, JM
    HIGH RESOLUTION SEPARATION AND ANALYSIS OF BIOLOGICAL MACROMOLECULES, PT B, 1996, 271 : 177 - 203