Single-molecule studies of viral DNA packaging

被引:52
|
作者
Smith, Douglas E. [1 ]
机构
[1] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
关键词
FORCE GENERATION; PORTAL MOTOR; LARGE SUBUNIT; Q-MOTIF; BACTERIOPHAGE; ATPASE; TRANSLOCATION; MECHANISM; TERMINASE; VELOCITY;
D O I
10.1016/j.coviro.2011.05.023
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Assembly of many dsDNA viruses involves packaging of DNA molecules into pre-assembled procapsids by portal molecular motor complexes. Techniques have recently been developed using optical tweezers to directly measure the packaging of single DNA molecules into single procapsids in real time and the forces generated by the molecular motor. Three different viruses, phages phi29, lambda, and T4, have been studied, revealing interesting similarities and differences in packaging dynamics. Single-molecule fluorescence methods have also been used to measure packaging kinetics and motor conformations. Here we review recent discoveries made using these new techniques.
引用
收藏
页码:134 / 141
页数:8
相关论文
共 50 条
  • [1] Single-Molecule Studies of Viral DNA Packaging
    Chemla, Yann R.
    Smith, Douglas E.
    VIRAL MOLECULAR MACHINES, 2012, 726 : 549 - 584
  • [2] Single-Molecule Studies of Viral DNA Packaging with Optical Tweezers: Molecular Motor Function and DNA Confinement
    Smith, Douglas E.
    Tsay, James M.
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 15A - 16A
  • [3] Single-molecule measurements of viral ssRNA packaging
    Hanhijarvi, Kalle J.
    Ziedaite, Gabija
    Bamford, Dennis H.
    Haeggstrom, Edward
    Poranen, Minna M.
    RNA, 2017, 23 (01) : 119 - 129
  • [4] Single molecule studies of the effect of spermidine on DNA mechanics and viral DNA packaging
    Keller, Nicholas
    Smith, Douglas E.
    OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION IX, 2012, 8458
  • [5] Single Molecule Studies of the Effect of Spermidine on DNA Mechanics and Viral DNA Packaging
    Keller, Nicholas A.
    Smith, Douglas E.
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 274A - 274A
  • [6] Single-molecule DNA sequencing of a viral genome
    Harris, Timothy D.
    Buzby, Phillip R.
    Babcock, Hazen
    Beer, Eric
    Bowers, Jayson
    Braslavsky, Ido
    Causey, Marie
    Colonell, Jennifer
    DiMeo, James
    Efcavitch, J. William
    Giladi, Eldar
    Gill, Jaime
    Healy, John
    Jarosz, Mirna
    Lapen, Dan
    Moulton, Keith
    Quake, Stephen R.
    Steinmann, Kathleen
    Thayer, Edward
    Tyurina, Anastasia
    Ward, Rebecca
    Weiss, Howard
    Xie, Zheng
    SCIENCE, 2008, 320 (5872) : 106 - 109
  • [7] Single-Molecule Studies of the Bacteriophage T4 DNA Packaging Motor
    Davenport, Amy
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 641A - 642A
  • [8] Single-molecule studies of DNA replication
    van Oijen, Antoine M.
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2011, 40 : 99 - 100
  • [9] Single-molecule studies of DNA replication
    van Oijen, Antoine M.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243
  • [10] Single-molecule studies of DNA mechanics
    Bustamante, C
    Smith, SB
    Liphardt, J
    Smith, D
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (03) : 279 - 285