Fiji: an open-source platform for biological-image analysis

被引：35
|
作者：
Schindelin, Johannes [1 ]
Arganda-Carreras, Ignacio [2 ]
Frise, Erwin [3 ]
Kaynig, Verena [4 ]
Longair, Mark [5 ]
Pietzsch, Tobias [1 ]
Preibisch, Stephan [1 ]
Rueden, Curtis [6 ]
Saalfeld, Stephan [1 ]
Schmid, Benjamin [7 ]
Tinevez, Jean-Yves [8 ]
White, Daniel James [1 ]
Hartenstein, Volker [9 ]
Eliceiri, Kevin [6 ]
Tomancak, Pavel [1 ]
Cardona, Albert [5 ]
机构：
[1] Max Planck Inst Mol Cell Biol & Genet, Dresden, Germany
[2] MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Dept Genome Dynam, Berkeley Drosophila Genome Project, Berkeley, CA 94720 USA
[4] Swiss Fed Inst Technol Zurich, Dept Comp Sci, Zurich, Switzerland
[5] Univ Zurich, Inst Neuroinformat, Zurich, Switzerland
[6] Univ Wisconsin, Lab Opt & Computat Instrumentat, Madison, WI USA
[7] Univ Wurzburg, Dept Neurobiol & Genet, Wurzburg, Germany
[8] Inst Pasteur, Paris, France
[9] Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA USA
来源：
NATURE METHODS | 2012年 / 9卷 / 07期
基金：
欧洲研究理事会; 美国国家卫生研究院;
关键词：
3D VISUALIZATION; GENE-EXPRESSION; REGISTRATION; RECONSTRUCTION; DROSOPHILA; SOFTWARE; GENOME; ATLAS;
D O I：
10.1038/NMETH.2019
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Fiji is a distribution of the popular open-source software I ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into I ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
引用
收藏
页码：676 / 682
页数：7
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