Open and reproducible neuroimaging: From study inception to publication

被引:37
|
作者
Niso, Guiomar [1 ,2 ,3 ,4 ]
Botvinik-Nezer, Rotem [5 ]
Appelhoff, Stefan [6 ]
De la Vega, Alejandro [7 ]
Esteban, Oscar [8 ,9 ,10 ]
Etzel, Joset A. [11 ]
Finc, Karolina [12 ]
Ganz, Melanie [13 ,14 ]
Gau, Remi [15 ]
Halchenko, Yaroslav O. [5 ]
Herholz, Peer [16 ]
Karakuzu, Agah [17 ,18 ]
Keator, David B. [19 ]
Markiewicz, Christopher J. [10 ]
Maumet, Camille [20 ]
Pernet, Cyril R. [13 ]
Pestilli, Franco [1 ,7 ]
Queder, Nazek [16 ,21 ]
Schmitt, Tina [22 ]
Sojka, Weronika [23 ]
Wagner, Adina S. [24 ]
Whitaker, Kirstie J. [25 ]
Rieger, Jochem W. [23 ,26 ]
机构
[1] Indiana Univ, Psychol & Brain Sci, Bloomington, IN 47405 USA
[2] Univ Politecn Madrid, Madrid, Spain
[3] CIBER BBN, Madrid, Spain
[4] CSIC, Inst Cajal, Madrid, Spain
[5] Dartmouth Coll, Dept Psychol & Brain Sci, Hanover, NH 03755 USA
[6] Max Planck Inst Human Dev, Ctr Adapt Rational, Berlin, Germany
[7] Univ Texas Austin, Dept Psychol, Austin, TX 78712 USA
[8] Lausanne Univ Hosp, Dept Radiol, Lausanne, Switzerland
[9] Univ Lausanne, Lausanne, Switzerland
[10] Stanford Univ, Dept Psychol, Stanford, CA USA
[11] Washington Univ, Dept Psychol & Brain Sci, St Louis, MO 63110 USA
[12] Nicolaus Copernicus Univ, Ctr Modern Interdisciplinary Technol, Torun, Poland
[13] Rigshosp, Neurobiol Res Unit, Copenhagen, Denmark
[14] Univ Copenhagen, Dept Comp Sci, Copenhagen, Denmark
[15] Catholic Univ Louvain, Inst Psychol, Louvain La Neuve, Belgium
[16] McGill Univ, Montreal Neurol Inst Hosp, Montreal, PQ, Canada
[17] Polytech Montreal, Biomed Engn Inst, Montreal, PQ, Canada
[18] Montreal Heart Inst, Montreal, PQ, Canada
[19] Univ Calif Irvine, Dept Psychiat & Human Behav, Irvine, CA 92717 USA
[20] Univ Rennes, CNRS, INRIA, Inserm IRISA UMR 6074,Empenn ERL U 1228, Rennes, France
[21] Univ Calif Irvine, Dept Neurobiol & Behav, Irvine, CA USA
[22] Carl von Ossietzky Univ Oldenburg, Neuroimaging Unit, Oldenburg, Germany
[23] Nicolaus Copernicus Univ, Fac Philosophy & Social Sci, Torun, Poland
[24] Res Ctr Juelich, Inst Neurosci & Med, Julich, Germany
[25] British Lib, Alan Turing Inst, London, England
[26] Carl von Ossietzky Univ Oldenburg, Dept Psychol, Oldenburg, Germany
基金
瑞士国家科学基金会; 美国国家卫生研究院; 英国工程与自然科学研究理事会;
关键词
Open science; Reproducibility; MRI; PET; MEG; EEG; PREPROCESSING PIPELINES; REGISTERED REPORTS; FMRI; SOFTWARE; TRANSPARENT; EEG; MEG; MRI; VISUALIZATION; CREDIBILITY;
D O I
10.1016/j.neuroimage.2022.119623
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Empirical observations of how labs conduct research indicate that the adoption rate of open practices for trans-parent, reproducible, and collaborative science remains in its infancy. This is at odds with the overwhelming evidence for the necessity of these practices and their benefits for individual researchers, scientific progress, and society in general. To date, information required for implementing open science practices throughout the different steps of a research project is scattered among many different sources. Even experienced researchers in the topic find it hard to navigate the ecosystem of tools and to make sustainable choices. Here, we provide an integrated overview of community-developed resources that can support collaborative, open, reproducible, replicable, robust and generalizable neuroimaging throughout the entire research cycle from inception to publica-tion and across different neuroimaging modalities. We review tools and practices supporting study inception and planning, data acquisition, research data management, data processing and analysis, and research dissemination. An online version of this resource can be found at https://oreoni.github.io . We believe it will prove helpful for researchers and institutions to make a successful and sustainable move towards open and reproducible science and to eventually take an active role in its future development.
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页数:19
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