Non-canonical DNA structures: Diversity and disease association

被引:36
|
作者
Bansal, Aparna [1 ,2 ]
Kaushik, Shikha [1 ,3 ]
Kukreti, Shrikant [1 ]
机构
[1] Univ Delhi, Dept Chem, Nucl Acid Res Lab, Delhi, India
[2] Univ Delhi, Hansraj Coll, Dept Chem, Delhi, India
[3] Univ Delhi, Rajdhani Coll, Dept Chem, New Delhi, India
关键词
non-canonical DNA; G-quadruplex; triplex; cruciform; Z-DNA; G-QUADRUPLEX DNA; TRIPLEX-FORMING OLIGONUCLEOTIDES; C-MYC PROMOTER; SEQUENCE-SPECIFIC RECOGNITION; CARBOXYL-TERMINAL PROPEPTIDE; POLYCYSTIC KIDNEY-DISEASE; I-MOTIF STRUCTURES; DOUBLE-HELICAL DNA; FRAGILE-X-SYNDROME; CENTER-DOT-G;
D O I
10.3389/fgene.2022.959258
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A complete understanding of DNA double-helical structure discovered by James Watson and Francis Crick in 1953, unveil the importance and significance of DNA. For the last seven decades, this has been a leading light in the course of the development of modern biology and biomedical science. Apart from the predominant B-form, experimental shreds of evidence have revealed the existence of a sequence-dependent structural diversity, unusual non-canonical structures like hairpin, cruciform, Z-DNA, multistranded structures such as DNA triplex, G-quadruplex, i-motif forms, etc. The diversity in the DNA structure depends on various factors such as base sequence, ions, superhelical stress, and ligands. In response to these various factors, the polymorphism of DNA regulates various genes via different processes like replication, transcription, translation, and recombination. However, altered levels of gene expression are associated with many human genetic diseases including neurological disorders and cancer. These non-B-DNA structures are expected to play a key role in determining genetic stability, DNA damage and repair etc. The present review is a modest attempt to summarize the available literature, illustrating the occurrence of non-canonical structures at the molecular level in response to the environment and interaction with ligands and proteins. This would provide an insight to understand the biological functions of these unusual DNA structures and their recognition as potential therapeutic targets for diverse genetic diseases.
引用
收藏
页数:30
相关论文
共 50 条
  • [1] Non-canonical DNA structures in the human ribosomal DNA
    Evgeny Smirnov
    Pavla Molínová
    Nikola Chmúrčiaková
    Tomáš Vacík
    Dušan Cmarko
    Histochemistry and Cell Biology, 2023, 160 : 499 - 515
  • [2] Non-canonical DNA structures in the human ribosomal DNA
    Smirnov, Evgeny
    Molinova, Pavla
    Chmurciakova, Nikola
    Vacik, Tomas
    Cmarko, Dusan
    HISTOCHEMISTRY AND CELL BIOLOGY, 2023, 160 (06) : 499 - 515
  • [3] Effect of Non-Canonical Structures on the DNA Duplex
    Huiting, Leah
    Frankel, Elisa B.
    Wenke, Belinda B.
    Dietrich, Catherine A.
    Lane, Benjamin F.
    Nunez, Megan E.
    BIOPHYSICAL JOURNAL, 2013, 104 (02) : 28A - 28A
  • [4] Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae
    Nikulin, Nikita A.
    Zimin, Andrei A.
    FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [5] Non-canonical DNA structures and their interactions with small molecule ligands
    Yatsunyk, L. A.
    Lin, L. Y.
    Beseiso, D.
    Beseiso, D.
    Jordan, D. A.
    Powell, B. M.
    McCarthy, S.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2021, 77 : C521 - C521
  • [6] Activity of DNA ligase on substrates containing non-canonical structures
    Bilotti, Katharina
    Schermerhorn, Kelly
    Delaney, Sarah
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2013, 31 : 66 - 67
  • [7] Base modifications in DNA non-canonical structures regulate transcription
    Fleming, Aaron
    Burrows, Cynthia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [8] Processing of non-canonical DNA structures by RNA polymerase.
    VanOverbelke, J. L.
    DeSilva, E.
    Wang, G.
    Vasquez, K. M.
    Tornaletti, S.
    Hanawalt, P. C.
    ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, 2006, 47 (06) : 427 - 427
  • [9] Non-canonical DNA structures: Comparative quantum mechanical study
    Bachurin, Stanislav S.
    Kletskii, Mikhail E.
    Burov, Oleg N.
    Kuibatov, Sergey V.
    BIOPHYSICAL CHEMISTRY, 2018, 235 : 19 - 28
  • [10] Supramolecular recognition of non-canonical DNA structures in vitro and in cells
    Hannon, M.
    JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2014, 19 : S118 - S118