Fast time-reversible algorithms for molecular dynamics of rigid-body systems

被引:6
|
作者
Kajima, Yasuhiro [1 ,3 ]
Hiyama, Miyabi [2 ]
Ogata, Shuji [1 ]
Kobayashi, Ryo [1 ]
Tamura, Tomoyuki [1 ]
机构
[1] Nagoya Inst Technol, Grad Sch Engn, Nagoya, Aichi 4668555, Japan
[2] Nagoya Univ, Grad Sch Informat Sci, Nagoya, Aichi 4648601, Japan
[3] Nagoya Zokei Univ, Komaki, Aichi 4858563, Japan
来源
JOURNAL OF CHEMICAL PHYSICS | 2012年 / 136卷 / 23期
基金
日本学术振兴会;
关键词
D O I
10.1063/1.4729284
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this paper, we present time-reversible simulation algorithms for rigid bodies in the quaternion representation. By advancing a time-reversible algorithm [Y. Kajima, M. Hiyama, S. Ogata, and T. Tamura, J. Phys. Soc. Jpn. 80, 114002 (2011)] that requires iterations in calculating the angular velocity at each time step, we propose two kinds of iteration-free fast time-reversible algorithms. They are easily implemented in codes. The codes are compared with that of existing algorithms through demonstrative simulation of a nanometer-sized water droplet to find their stability of the total energy and computation speeds. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4729284]
引用
收藏
页数:8
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