Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer

被引:7
|
作者
Wang, Yulan [1 ]
Zhao, Jian [1 ]
Wu, Jing [2 ]
Liu, Jingjing [1 ]
Wang, Yixuan [1 ]
Xu, Tianyi [3 ,4 ,5 ]
Zhang, Meng [1 ]
Zhuang, Minhui [1 ]
Zou, Lingxiao [1 ]
Sun, Wei [6 ]
Han, Ping [6 ]
Song, Xiaofeng [1 ]
机构
[1] Nanjing Univ Aeronaut & Astronaut, Dept Biomed Engn, Nanjing 211106, Peoples R China
[2] Nanjing Med Univ, Sch Biomed Engn & Informat, Nanjing 211166, Peoples R China
[3] Chinese Acad Sci, Natl Genom Data Ctr, Beijing 100101, Peoples R China
[4] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China
[5] China Natl Ctr Bioinformat, Beijing 100101, Peoples R China
[6] Nanjing Med Univ, Affiliated Hosp 1, Dept Gynecol & Obstet, Nanjing 210029, Peoples R China
基金
中国国家自然科学基金;
关键词
RNA editing; circRNA; Alu element; Cervical cancer; ceRNA; ADENOSINE DEAMINASES; INOSINE RNA; WEB SERVER; ADARS; BIOMARKER; ROLES; SITES; ACT;
D O I
10.1016/j.compbiomed.2023.107546
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cervical cancer, the second most common female malignant tumor, seriously threatens women's health and lives. Despite the availability of the HPV vaccine, effective treatment options for cervical cancer are still lacking. New research perspectives now clarify that RNA editing dysregulation and changes in circRNA expression are jointly involved in disease pathogenesis, so molecular changes associated with circRNA and RNA editing may provide clues for the development of new therapeutic strategies for cervical cancer. In this study, we designed a series of pipelines to identify and analyze dysregulated RNA editing events in circRNAs. Our findings indicate a decrease in A-to-I RNA editing levels in cervical cancer compared to normal tissues, and editing may influence the back-splicing process of circRNAs through structural modifications of Alu elements. Moreover, our research reveals that RNA editing could modulate circRNA biogenesis by influencing RNA binding protein (RBP) binding on a transcriptome-wide scale, as well as influence the expression and coding potential of circRNAs. Importantly, we identified three RNA editing sites that could serve as potential biomarkers. In summary, our study presents a comprehensive landscape of RNA editing perturbations in circRNAs, providing new insights into the complex relationship between RNA editing and circRNA dysregulation in cervical cancer.
引用
收藏
页数:13
相关论文
共 35 条
  • [1] Genome-wide evaluation and discovery of vertebrate A-to-I RNA editing sites
    Maas, S.
    Sie, C. P. Godfried
    Stoev, I.
    Dupuis, D. E.
    Latona, J.
    Porman, A. M.
    Evans, B.
    Rekawek, P.
    Kluempers, V.
    Mutter, M.
    Gommans, W. M.
    Lopresti, D.
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2011, 412 (03) : 407 - 412
  • [2] Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes
    Liu, Huiquan
    Wang, Qinhu
    He, Yi
    Chen, Lingfeng
    Hao, Chaofeng
    Jiang, Cong
    Li, Yang
    Dai, Yafeng
    Kang, Zhensheng
    Xu, Jin-Rong
    GENOME RESEARCH, 2016, 26 (04) : 499 - 509
  • [3] A-to-I RNA editing as a tuner of noncoding RNAs in cancer
    Liao, Yuanfan
    Jung, Seung Ho
    Kim, Taewan
    CANCER LETTERS, 2020, 494 : 88 - 93
  • [4] Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
    Georges St Laurent
    Michael R Tackett
    Sergey Nechkin
    Dmitry Shtokalo
    Denis Antonets
    Yiannis A Savva
    Rachel Maloney
    Philipp Kapranov
    Charles E Lawrence
    Robert A Reenan
    Nature Structural & Molecular Biology, 2013, 20 : 1333 - 1339
  • [5] Genome-wide expression changes mediated by A-to-I RNA editing correlate with hepatic oncogenesis
    Li, Jian
    Li, Qun
    Yu, Chun-Peng
    Chang, Shuai
    Xie, Ling-Ling
    Wang, Song
    TRANSLATIONAL CANCER RESEARCH, 2021, 10 (06) : 2725 - +
  • [6] Genome-wide identification of A-to-I RNA editing events provides the functional implications in PDAC
    Mei, Yue
    Liang, Dong
    Ai, Bin
    Wang, Tengjiao
    Guo, Shiwei
    Jin, Gang
    Yu, Dong
    FRONTIERS IN ONCOLOGY, 2023, 13
  • [7] Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila
    St Laurent, Georges
    Tackett, Michael R.
    Nechkin, Sergey
    Shtokalo, Dmitry
    Antonets, Denis
    Savva, Yiannis A.
    Maloney, Rachel
    Kapranov, Philipp
    Lawrence, Charles E.
    Reenan, Robert A.
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (11) : 1333 - U141
  • [8] Genome-wide identification and analysis of A-to-I RNA editing events in bovine by transcriptome sequencing
    Bakhtiarizadeh, Mohammad Reza
    Salehi, Abdolreza
    Rivera, Rocio Melissa
    PLOS ONE, 2018, 13 (02):
  • [9] The role of A-to-I RNA editing in cancer development
    Xu, Xiaoyan
    Wang, Yumeng
    Liang, Han
    CURRENT OPINION IN GENETICS & DEVELOPMENT, 2018, 48 : 51 - 56
  • [10] Reduction of A-to-I RNA editing in the failing human heart regulates formation of circular RNAs
    Karoline E. Kokot
    Jasmin M. Kneuer
    David John
    Sabine Rebs
    Maximilian N. Möbius-Winkler
    Stephan Erbe
    Marion Müller
    Michael Andritschke
    Susanne Gaul
    Bilal N. Sheikh
    Jan Haas
    Holger Thiele
    Oliver J. Müller
    Susanne Hille
    Florian Leuschner
    Stefanie Dimmeler
    Katrin Streckfuss-Bömeke
    Benjamin Meder
    Ulrich Laufs
    Jes-Niels Boeckel
    Basic Research in Cardiology, 2022, 117