Classification of Bisgaard taxon 6 and taxon 10 as Exercitatus varius gen. nov., sp. nov.

被引:3
|
作者
Christensen, Henrik [1 ]
Sells, Stephen F. [2 ]
Macglover, Chris [3 ]
Bisgaard, Magne [4 ]
机构
[1] Univ Copenhagen, Dept Vet Anim Sci, Copenhagen, Denmark
[2] 136 White Oak Trace, Lexington, KY 40511 USA
[3] Univ Wyoming, Dept Vet Sci, 1174 Snowy Range Rd, Laramie, WY USA
[4] Bisgaard Consulting, Viby Saelland, Denmark
关键词
mare reproductive loss syndrome; 1,3-diaminopropane; red panda; DNA-DNA HYBRIDIZATION; FAMILY PASTEURELLACEAE; ACTINOBACILLUS; PHYLOGENY; AEROGENES; MEMBERS; HORSES;
D O I
10.1099/ijsem.0.006092
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Forty- one isolates of Bisgaard taxon 6 obtained from guinea pigs, pandas, pigs and muskrat and isolates of taxon 10 from horses and horse bites in humans were subjected phenotypic characterization. Production of acid from (-)-o-mannitol, (-)-o- sorbitol and (+)-o- glycogen separated taxon 10 (positive) from taxon 6 (negative), while from two to 11 phenotypic characteristics separated taxa 6 and 10 from the 32 genera of Pasteurellaceae reported so far. Forty- four strains were genetically characterized. Sequencing of 16S rRNA genes documented a monophyletic relationship at the species level and the highest 16S rRNA gene sequence similarity of 95.6 % to other species was found between strain CCUG 15568T and the type strain of Mannheimia glucosida (CCUG 38457T). Digital DNA-DNA hybridization (dDDH) values predicted from whole genomic sequences between CCUG 15568T and other characterized strains of taxa 6 and 10 were 69.3-99.9 %. The average nucleotide identity values were higher than 95 % for all strains. The highest dDDH value of 29 % outside the taxa 6 and 10 group was obtained with the genome of the type strain of [Actinobacillus] succinogenes, indicating a separate taxonomic status at species level to taxa 6 and 10. The phylogenetic comparison of concatenated conserved protein sequences showed the unique position of the taxa investigated in the current study which qualified for the status of a new genus since the highest identity was found with Basfia with 79 %, well below the upper threshold between genera of 85 %. Based upon the low genetic similarity to other genera of the family Pasteurellaceae and a unique phenotype, we suggest that Bisgaard taxa 6 and 10 should be classified as Exercitatus varius gen. nov., sp. nov. The G+C of the type strain of Exercitatus varius, 8.5T (=CCUG 15568T=DSM 115565T), is 46.2 mol%, calculated from the whole genome.
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页数:9
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