Probing the ligand binding specificity of FNBP4 WW domains and interaction with FH1 domain of FMN1

被引:2
|
作者
Das, Shubham [1 ]
Maiti, Sankar [1 ]
机构
[1] Indian Inst Sci Educ & Res Kolkata, Dept Biol Sci, Nadia 741246, West Bengal, India
关键词
FNBP4; FMN1; FH1; domain; WW domain; Protein-protein interaction; FORMIN PROTEINS; ACTIVATION; NUCLEATION; MECHANISM; PEPTIDES; FAMILY;
D O I
10.1016/j.crstbi.2023.100119
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Formins are a group of actin-binding proteins that mediate nascent actin filament polymerization, filament elongation, and barbed end-capping function, thereby regulating different cellular and developmental processes. Developmental processes like vertebrate gastrulation, neural growth cone dynamics, and limb development require formins functioning in a regulated manner. Formin-binding proteins like Rho GTPase regulate the activation of auto-inhibited conformation of diaphanous formins. Unlike other diaphanous formins, Formin1 (FMN1) a non-diaphanous formin is not regulated by Rho GTPase. FMN1 acts as an antagonist of the Bone Morphogenetic Protein (BMP) signaling pathway during limb development. Several previous reports demon-strated that WW domain-containing proteins can interact with poly-proline-rich amino acid stretches of formins and play a crucial role in developmental processes. In contrast, WW domain-containing Formin-binding Protein 4 (FNBP4) protein plays an essential role in limb development. It has been hypothesized that the interaction be-tween FNBP4 and FMN1 can further attribute to the role in limb development through the BMP signaling pathway. In this study, we have elucidated the binding kinetics of FNBP4 and FMN1 using surface plasmon resonance (SPR) and enzyme-linked immunosorbent assays (ELISA). Our findings confirm that the FNBP4 ex-hibits interaction with the poly-proline-rich formin homology 1 (FH1) domain of FMN1. Furthermore, only the first WW1 domains are involved in the interaction between the two domains. Thus, this study sheds light on the binding potentialities of WW domains of FNBP4 that might contribute to the regulation of FMN1 function.
引用
收藏
页数:7
相关论文
共 50 条
  • [1] Understanding the Interaction of Human Formin Binding Protein 4 with Formin FMN1
    Das, Amit
    Bhattacharya, Simanti
    Bagchi, Angshuman
    Dasgupta, Rakhi
    INFORMATION SYSTEMS DESIGN AND INTELLIGENT APPLICATIONS, VOL 2, 2015, 340 : 105 - 113
  • [2] Probing the ligand-binding specificity and analyzing the folding state of SPOT-synthesized FBP28WW domain variants
    Przezdziak, Jana
    Tremmel, Sandra
    Kretzschmar, Ines
    Beyermann, Michael
    Bienert, Michael
    Volkmer-Engert, Rudolf
    CHEMBIOCHEM, 2006, 7 (05) : 780 - 788
  • [3] The role of Nedd4-1 WW domains in binding and regulating human organic anion transporter 1
    Xu, Da
    Wang, Haoxun
    Gardner, Carol
    Pan, Zui
    Zhang, Ping L.
    Zhang, Jinghui
    You, Guofeng
    AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, 2016, 311 (02) : F320 - F329
  • [4] A cooperative jack model of random coil-to-elongation transition of the FH1 domain by profilin binding explains formin motor behavior in actin polymerization
    Zhao, Chen
    Liu, Chengcheng
    Hogue, Christopher W. V.
    Low, Boon Chuan
    FEBS LETTERS, 2014, 588 (14) : 2288 - 2293
  • [5] Modulating the folding stability and ligand binding affinity of Pin1 WW domain by proline ring puckering
    Tang, Hsu-Cheng
    Lin, Yu-Ju
    Horng, Jia-Cherng
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2014, 82 (01) : 67 - 76
  • [6] Binding of an RNA pol II Ligand to the WW Domain of Pin1 Using Molecular Dynamics Docking Simulations
    Ng, Chai Ann
    Oehme, Daniel P.
    Kato, Yusuke
    Tanokura, Masaru
    Brownlee, Robert T. C.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (10) : 2886 - 2897
  • [7] Multiple WW domains of Nedd4-1 undergo conformational exchange that is quenched upon peptide binding
    Panwalkar, Vineet
    Neudecker, Philipp
    Willbold, Dieter
    Dingley, Andrew J.
    FEBS LETTERS, 2017, 591 (11): : 1573 - 1583
  • [8] Fine specificity of ligand-binding domain 1 in the polymeric Ig receptor: Importance of the CDR2-containing region for IgM interaction
    Roe, M
    Norderhaug, IN
    Brandtzaeg, P
    Johansen, FE
    JOURNAL OF IMMUNOLOGY, 1999, 162 (10): : 6046 - 6052
  • [9] Ptx1 regulates SF-1 activity by an interaction that mimics the role of the ligand-binding domain
    Tremblay, JJ
    Marcil, A
    Gauthier, Y
    Drouin, J
    EMBO JOURNAL, 1999, 18 (12): : 3431 - 3441
  • [10] Conformational Dynamics and Structure Underlie the Novel Ligand Binding Specificity of a Tiam1 PDZ Domain Mutant
    Fuentes, Ernesto J.
    Liu, Xu
    Speckhard, David C.
    Shepherd, Tyson R.
    Hengel, Sarah R.
    Liping, Liping
    Fowler, C. Andrew
    Gakhar, Lokesh
    BIOPHYSICAL JOURNAL, 2016, 110 (03) : 514A - 514A