Structural Characterization of β-Xylosidase XynB2 from Geobacillus stearothermophilus CECT43: A Member of the Glycoside Hydrolase Family GH52

被引:1
|
作者
Gavira, Jose Antonio [1 ]
Contreras, Lellys M. [2 ]
Alshamaa, Hassan Mohamad [1 ,3 ]
Clemente-Jimenez, Josefa Maria [2 ]
Rodriguez-Vico, Felipe [2 ]
Las Heras-Vazquez, Francisco Javier [2 ]
Martinez-Rodriguez, Sergio [1 ,3 ]
机构
[1] Univ Granada, Lab Estudios Cristalog, Inst Andaluz Ciencias Tierra IACT, CSIC, Granada 18100, Spain
[2] Univ Almeria, Dept Quim & Fis, Almeria 04120, Spain
[3] Univ Granada, Dept Bioquim & Biol Mol Inmunol 3, Granada 18100, Spain
关键词
crystallization of beta-xylosidase; XynB2; Glycoside Hydrolase Family 52; Glycoside Hydrolase Family 116; GLUCOSIDASE; CRYSTALLIZATION; IDENTIFICATION; REFINEMENT; EXPRESSION; EVOLUTION; BACTERIUM; FEATURES; REVEALS; BINDING;
D O I
10.3390/cryst14010018
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
beta-xylosidases (4-beta-d-xylan xylohydrolase, E.C. 3.2.1.37) are glycoside hydrolases (GH) catalyzing the hydrolysis of (1 -> 4)-beta-d-xylans, allowing for the removal of beta-d-xylose residues from its non-reducing termini. Together with other xylan-degrading enzymes, beta-xylosidases are involved in the enzymatic hydrolysis of lignocellulosic biomass, making them highly valuable in the biotechnological field. Whereas different GH families are deeply characterized from a structural point of view, the GH52 family has been barely described. In this work, we report the 2.25 & Aring; resolution structure of Geobacillus stearothermophilus CECT43 XynB2, providing the second structural characterization for this GH family. A plausible dynamic loop closing the entrance of the catalytic cleft is proposed based on the comparison of the available GH52 structures, suggesting the relevance of a dimeric structure for members of this family. The glycone specificity at the -1 site for GH52 and GH116 members is also explained by our structural studies.
引用
收藏
页数:16
相关论文
共 15 条
  • [1] The family 52 β-xylosidase from Geobacillus stearothermophilus is a dimer: Structural and biophysical characterization of a glycoside hydrolase
    Contreras, Lellys M.
    Gomez, Javier
    Prieto, Jesus
    Clemente-Jimenez, Josefa M.
    Las Heras-Vazquez, Francisco J.
    Rodriguez-Vico, Felipe
    Blanco, Francisco J.
    Neira, Jose L.
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2008, 1784 (12): : 1924 - 1934
  • [2] Detailed kinetic analysis of a family 52 glycoside hydrolase:: A β-xylosidase from Geobacillus stearothermophilus
    Bravman, T
    Zolotnitsky, G
    Belakhov, V
    Shoham, G
    Henrissat, B
    Baasov, T
    Shoham, Y
    BIOCHEMISTRY, 2003, 42 (35) : 10528 - 10536
  • [3] A novel β-xylosidase structure from Geobacillus thermoglucosidasius: the first crystal structure of a glycoside hydrolase family GH52 enzyme reveals unpredicted similarity to other glycoside hydrolase folds
    Espina, Giannina
    Eley, Kirstin
    Pompidor, Guillaume
    Schneider, Thomas R.
    Crennell, Susan J.
    Danson, Michael J.
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2014, 70 : 1366 - 1374
  • [4] Identification of the catalytic residues in family 52 glycoside hydrolase, a β-xylosidase from Geobacillus stearothermophilus T-6
    Bravman, T
    Belakhov, V
    Solomon, D
    Shoham, G
    Henrissat, B
    Baasov, T
    Shoham, Y
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (29) : 26742 - 26749
  • [5] Purification and Characterization of a Glycoside Hydrolase Family 43 β-xylosidase from Geobacillus thermoleovorans IT-08
    Kurt Wagschal
    Chamroeun Heng
    Charles C. Lee
    George H. Robertson
    William J. Orts
    Dominic W. S. Wong
    Applied Biochemistry and Biotechnology, 2009, 155 : 1 - 10
  • [6] Purification and Characterization of a Glycoside Hydrolase Family 43 β-xylosidase from Geobacillus thermoleovorans IT-08
    Wagschal, Kurt
    Heng, Chamroeun
    Lee, Charles C.
    Robertson, George H.
    Orts, William J.
    Wong, Dominic W. S.
    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2009, 155 (1-3) : 304 - 313
  • [7] GH52 xylosidase from Geobacillus stearothermophilus: characterization and introduction of xylanase activity by site-directed mutagenesis of Tyr509
    Huang, Zongqing
    Liu, Xiaoshuang
    Zhang, Shaowei
    Liu, Ziduo
    JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2014, 41 (01) : 65 - 74
  • [8] Preliminary crystallographic analysis of Xyn52B2, a GH52 β-D-xylosidase from Geobacillus stearothermophilus T6
    Dann, Roie
    Lansky, Shifra
    Lavid, Noa
    Zehavi, Arie
    Belakhov, Valery
    Baasov, Timor
    Dvir, Hay
    Manjasetty, Babu
    Belrhali, Hassan
    Shoham, Yuval
    Shoham, Gil
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 : 1675 - 1682
  • [9] Glycosynthase activity of Geobacillus stearothermophilus GH52 β-xylosidase:: Efficient synthesis of xylooligosaccharides from α-D-xylopyranosyl fluoride through a conjugated reaction
    Ben-David, Alon
    Bravman, Tsafrir
    Balazs, Yael S.
    Czjzek, Mirjam
    Schomburg, Dietmar
    Shoham, Gil
    Shoham, Yuval
    CHEMBIOCHEM, 2007, 8 (17) : 2145 - 2151
  • [10] Characterization of Cross-Linked Enzyme Aggregates of the Y509E Mutant of a Glycoside Hydrolase Family 52 β-xylosidase from G. stearothermophilus
    Romero, Gabriela
    Contreras, Lellys M.
    Aguirre, Carolina
    Wilkesman, Jeff
    Clemente-Jimenez, Josefa Maria
    Rodriguez-Vico, Felipe
    Las Heras-Vazquez, Francisco Javier
    MOLECULES, 2021, 26 (02):