tRFUniverse: A comprehensive resource for the interactive analyses of tRNA-derived ncRNAs in human cancer

被引:0
|
作者
La Ferlita, Alessandro [1 ]
Alaimo, Salvatore [2 ]
Nigita, Giovanni [1 ]
Distefano, Rosario [1 ]
Beane, Joal D. [3 ]
Tsichlis, Philip N. [1 ]
Ferro, Alfredo [2 ]
Croce, Carlo M. [1 ]
Pulvirenti, Alfredo [2 ]
机构
[1] Ohio State Univ, James Comprehens Canc Ctr, Dept Canc Biol & Genet, Columbus, OH USA
[2] Univ Catania, Dept Clin & Expt Med, Knowm Lab, Catania, Italy
[3] Ohio State Univ, James Comprehens Canc Ctr, Dept Surg, Div Surg Oncol, Columbus, OH USA
关键词
SMALL NONCODING RNA; CELL-PROLIFERATION; FRAGMENTS TRFS; DATABASE; EXPRESSION; HALVES; CLIP; KEGG; RECOGNITION; METASTASIS;
D O I
10.1016/j.isci.2024.108810
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
tRNA-derived ncRNAs are a heterogeneous class of non -coding RNAs recently proposed to be active regulators of gene expression and be involved in many diseases, including cancer. Consequently, several online resources on tRNA-derived ncRNAs have been released. Although interesting, such resources present only basic features and do not adequately exploit the wealth of knowledge available about tRNA-derived ncRNAs. Therefore, we introduce tRFUniverse, a novel online resource for the analysis of tRNA-derived ncRNAs in human cancer. tRFUniverse presents an extensive collection of classes of tRNA-derived ncRNAs analyzed across all the TCGA and TARGET tumor cohorts, NCI -60 cell lines, and biological fluids. Moreover, public AGO CLASH/CLIP-Seq data were analyzed to identify the molecular interactions between tRNA-derived ncRNAs and other transcripts. Importantly, tRFUniverse combines in a single resource a comprehensive set of features that we believe may be helpful to investigate the involvement of tRNAderived ncRNAs in cancer biology.
引用
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页数:17
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