Application of spatially resolved transcriptomics to screen multiple tumor biospecimens using tissue microarrays

被引：0
|
作者：
Mohabbat, Syrus
Singh, Hardeep
Williams, Stephen R.
Gutgesell, Lauren M. M.
Sukovich, David J.
Kamath, Govinda M.
Kim, Hanyoup
Janesick, Amanda
Shelansky, Robert
Beliakoff, Ghezal
Tentori, Augusto M.
Kim, Albert
Uytingco, Cedric R.
Taylor, Sarah
机构：
来源：
CANCER RESEARCH | 2023年 / 83卷 / 07期
关键词：
D O I：
10.1158/1538-7445.AM2023-4708
中图分类号：
R73 [肿瘤学];
学科分类号：
100214 ;
摘要：
4708
引用
收藏
页数：2
相关论文
共 50 条
  • [1] Simulating multiple variability in spatially resolved transcriptomics with scCube
    Qian, Jingyang
    Bao, Hudong
    Shao, Xin
    Fang, Yin
    Liao, Jie
    Chen, Zhuo
    Li, Chengyu
    Guo, Wenbo
    Hu, Yining
    Li, Anyao
    Yao, Yue
    Fan, Xiaohui
    Cheng, Yiyu
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [2] Detection of tissue-border-specific marker genes using spatially resolved transcriptomics
    Hammer, Vincent
    Ossowski, Stephan
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1662 - 1662
  • [3] Spatially contrastive variational autoencoder for deciphering tissue heterogeneity from spatially resolved transcriptomics
    Hu, Yaofeng
    Xiao, Kai
    Yang, Hengyu
    Liu, Xiaoping
    Zhang, Chuanchao
    Shi, Qianqian
    BRIEFINGS IN BIOINFORMATICS, 2024, 25 (02)
  • [4] Pan-cancer characterization of tumor-immune interactions using spatially resolved transcriptomics
    Pei, Guangsheng
    Wu, Jingjing
    Dai, Enyu
    Liu, Yunhe
    Han, Guangchun
    Hu, Jian
    Peng, Fuduan
    Cho, Kyung S.
    Jiang, Jiahui
    Zhang, Daiwei
    Sinjab, Ansam F.
    Zhang, Boyu
    Song, Shumei
    Fujimoto, Junya
    Soto, Luisa M. Solis
    Maitra, Anirban
    Ajani, Jaffer
    Li, Mingyao
    Kadara, Humam
    Wang, Linghua
    CANCER RESEARCH, 2023, 83 (07)
  • [5] Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface
    Hunter, Miranda V.
    Moncada, Reuben
    Weiss, Joshua M.
    Yanai, Itai
    White, Richard M.
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [6] Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface
    Miranda V. Hunter
    Reuben Moncada
    Joshua M. Weiss
    Itai Yanai
    Richard M. White
    Nature Communications, 12
  • [7] Computational modeling for deciphering tissue microenvironment heterogeneity from spatially resolved transcriptomics
    Zhang, Chuanchao
    Wang, Lequn
    Shi, Qianqian
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 23 : 2109 - 2115
  • [8] Dissecting tumor microenvironment from spatially resolved transcriptomics data by heterogeneous graph learning
    Zuo, Chunman
    Xia, Junjie
    Chen, Luonan
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [9] SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor
    Righelli, Dario
    Weber, Lukas M.
    Crowell, Helena L.
    Pardo, Brenda
    Collado-Torres, Leonardo
    Ghazanfar, Shila
    Lun, Aaron T. L.
    Hicks, Stephanie C.
    Risso, Davide
    BIOINFORMATICS, 2022, 38 (11) : 3128 - 3131
  • [10] Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart
    Enikő Lázár
    Yuvarani Masarapu
    Jian Wu
    Tibor Várkonyi
    Tibor Glasz
    András Kiss
    Erik Borgström
    Andrew Hill
    Sefanit Rezene
    Soham Gupta
    Aleksandra Jurek
    Anezka Niesnerová
    Henrik Druid
    Olaf Bergmann
    Stefania Giacomello
    Genome Biology, 24
12345