The InBIO barcoding initiative database: DNA barcodes of Iberian Trichoptera, documenting biodiversity for freshwater biomonitoring in a Mediterranean hotspot

被引:4
|
作者
Pauperio, Joana [1 ,2 ,3 ]
Gonzalez, Luis Martin [4 ]
Martinez, Jesus [4 ]
Gonzalez, Marcos [4 ]
Martins, Filipa M. S. [1 ,2 ]
Verissimo, Joana [1 ,2 ,5 ]
Puppo, Pamela [6 ]
Pinto, Joana [1 ,2 ]
Chaves, Catia [1 ,2 ]
Pinho, Catarina J. [1 ,2 ,5 ]
Grosso-Silva, Jose Manuel [7 ]
Quaglietta, Lorenzo [2 ,6 ]
Silva, Teresa Luisa [1 ,2 ]
Sousa, Pedro [1 ,2 ]
Alves, Paulo Celio [1 ,2 ]
Fonseca, Nuno [1 ,2 ]
Beja, Pedro [1 ,2 ,8 ]
Ferreira, Sonia [1 ,2 ,9 ]
机构
[1] Univ Porto, Ctr Invest Biodiversidade & Recursos Genet, InBIO Lab Associado, CIBIO, Campus Vairao,Vairao, P-4485661 Vila Do Conde, Portugal
[2] CIBIO, BIOPOLIS Program Genom Biodivers & Land Planning, Campus Vairao,Vairao, P-4485661 Vila Do Conde, Portugal
[3] European Bioinformat Inst, European Mol Biol Lab, Hinxton, Cambridge, England
[4] Univ Santiago Compostela, Fac Biol, Dept Zool Genet & Antropol Fis, Santiago De Compostela, Spain
[5] Univ Porto, Fac Ciencias, Dept Biol, P-4169007 Porto, Portugal
[6] Marshall Univ, Dept Biol Sci, Huntington, WV USA
[7] Univ Porto, Museu Hist Nat & Ciencia, Porto, Portugal
[8] Univ Lisbon, Ctr Invest Biodiversidade & Recursos Genet, InBIO Lab Associado, CIBIO,Inst Superiorde Agron, Lisbon, Portugal
[9] EBM Estacao Biol Mertola, Praca Luis Camoes, Mertola, Portugal
关键词
Trichoptera; occurrence records; species distributions; continental Portugal; continental Spain; DNA barcode; cytochrome c oxidase subunit I (COI); ENVIRONMENTAL DNA; CADDISFLIES; PENINSULA; REVISION;
D O I
10.3897/BDJ.11.e97484
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
BackgroundThe Trichoptera are an important component of freshwater ecosystems. In the Iberian Peninsula, 380 taxa of caddisflies are known, with nearly 1/3 of the total species being endemic in the region. A reference collection of morphologically identified Trichoptera specimens, representing 142 Iberian taxa, was constructed. The InBIO Barcoding Initiative (IBI) Trichoptera 01 dataset contains records of 438 sequenced specimens. The species of this dataset correspond to about 37% of Iberian Trichoptera species diversity. Specimens were collected between 1975 and 2018 and are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources, Portugal) or in the collection Marcos A. Gonzalez at the University of Santiago de Compostela (Spain).New informationTwenty-nine species, from nine different families, were new additions to the Barcode of Life Data System (BOLD). A success identification rate of over 80% was achieved when comparing morphological identifications and DNA barcodes for the species analysed. This encouraging step advances incorporation of informed Environmental DNA tools in biomonitoring schemes, given the shortcomings of morphological identifications of larvae and adult Caddisflies in such studies. DNA barcoding was not successful in identifying species in six Trichoptera genera: Hydropsyche (Hydropsychidae), Athripsodes (Leptoceridae), Wormaldia (Philopotamidae), Polycentropus (Polycentropodidae) Rhyacophila (Rhyacophilidae) and Sericostoma (Sericostomatidae). The high levels of intraspecific genetic variability found, combined with a lack of a barcode gap and a challenging morphological identification, rendered these species as needing additional studies to resolve their taxonomy.
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页数:36
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