Synthesis, insertion, and characterization of SARS-CoV-2 membrane protein within lipid bilayers

被引:2
|
作者
Zhang, Yuanzhong [1 ]
Anbir, Sara [2 ]
Mctiernan, Joseph [3 ]
Li, Siyu [1 ]
Worcester, Michael [1 ]
Mishra, Pratyasha [4 ]
Colvin, Michael E. [5 ]
Gopinathan, Ajay [3 ]
Mohideen, Umar [1 ,2 ]
Zandi, Roya [1 ,2 ]
Kuhlman, Thomas E. [1 ,2 ,6 ]
机构
[1] Univ Calif Riverside, Dept Phys & Astron, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Biophys Program, Riverside, CA 92521 USA
[3] Univ Calif Merced, Dept Phys, Merced, CA 95340 USA
[4] Univ Calif Riverside, Dept Biochem, Riverside, CA 92521 USA
[5] Univ Calif Merced, Dept Chem & Biochem, Merced, CA 95340 USA
[6] Univ Calif Riverside, Microbiol Program, Riverside, CA 92521 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS; SOFTWARE NEWS; LINE TENSION; CHARMM; GUI; RECONSTITUTION; EXPRESSION; SYSTEM; SIMULATIONS; DETERGENTS;
D O I
10.1126/sciadv.adm7030
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Throughout history, coronaviruses have posed challenges to both public health and the global economy; nevertheless, methods to combat them remain rudimentary, primarily due to the absence of experiments to understand the function of various viral components. Among these, membrane (M) proteins are one of the most elusive because of their small size and challenges with expression. Here, we report the development of an expression system to produce tens to hundreds of milligrams of M protein per liter of Escherichia coli culture. These large yields render many previously inaccessible structural and biophysical experiments feasible. Using cryo-electron microscopy and atomic force microscopy, we image and characterize individual membrane-incorporated M protein dimers and discover membrane thinning in the vicinity, which we validated with molecular dynamics simulations. Our results suggest that the resulting line tension, along with predicted induction of local membrane curvature, could ultimately drive viral assembly and budding.
引用
收藏
页数:14
相关论文
共 50 条
  • [1] Synthesis and characterization of SARS-CoV-2 membrane protein
    Anbir, Sara
    Zhang, Yuanzhong
    Kuhlman, Thomas E.
    Mishra, Pratyasha
    Colvin, Michael E.
    Gopinathan, Ajay
    Mohideen, Umar
    Zandi, Roya
    McTiernan, Joseph
    Worcester, Michael
    Li, Siyu
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 349A - 349A
  • [2] SARS-CoV-2 Envelope Protein Forms Clustered Pentamers in Lipid Bilayers
    Somberg, Noah H.
    Wu, Westley W.
    Medeiros-Silva, Joao
    Dregni, Aurelio J.
    Jo, Hyunil
    DeGrado, William F.
    Hong, Mei
    BIOCHEMISTRY, 2022, 61 (21) : 2280 - 2294
  • [3] Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers
    Mandala, Venkata S.
    McKay, Matthew J.
    Shcherbakov, Alexander A.
    Dregni, Aurelio J.
    Kolocouris, Antonios
    Hong, Mei
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2020, 27 (12) : 1202 - U270
  • [4] Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers
    Venkata S. Mandala
    Matthew J. McKay
    Alexander A. Shcherbakov
    Aurelio J. Dregni
    Antonios Kolocouris
    Mei Hong
    Nature Structural & Molecular Biology, 2020, 27 : 1202 - 1208
  • [5] The effect of lipid and protein flexibility on membrane deformations caused by the SARS-CoV-2 E protein
    Sandberg, Jesse W.
    Brannigan, Grace H.
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 97A - 97A
  • [6] SARS-CoV-2 sabotages protein synthesis
    King, Anthony
    CHEMISTRY & INDUSTRY, 2020, 84 (10) : 5 - 5
  • [7] Structure and dynamics of membrane protein in SARS-CoV-2
    Mahtarin, Rumana
    Islam, Shafiqul
    Islam, Md. Jahirul
    Ullah, M. Obayed
    Ali, Md Ackas
    Halim, Mohammad A.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (10): : 4725 - 4738
  • [8] Structure of SARS-CoV-2 M protein in lipid nanodiscs
    Dolan, Kimberly A.
    Dutta, Mandira
    Kern, David M.
    Kotecha, Abhay
    Voth, Gregory A.
    Brohawn, Stephen G.
    ELIFE, 2022, 11
  • [9] Structure of SARS-CoV-2 M protein in lipid nanodiscs
    Dolan, Kimberly A.
    Dutta, Mandira
    Kern, David
    Kotecha, Abhay
    Voth, Gregory A.
    Brohawn, Steve
    BIOPHYSICAL JOURNAL, 2023, 122 (03) : 193A - 193A
  • [10] Biochemical characterization of SARS-CoV-2 nucleocapsid protein
    Zeng, Weihong
    Liu, Guangfeng
    Ma, Huan
    Zhao, Dan
    Yang, Yunru
    Liu, Muziying
    Mohammed, Ahmed
    Zhao, Changcheng
    Yang, Yun
    Xie, Jiajia
    Ding, Chengchao
    Ma, Xiaoling
    Weng, Jianping
    Gao, Yong
    He, Hongliang
    Jin, Tengchuan
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2020, 527 (03) : 618 - 623