Parallel fractional hot-deck imputation (P-FHDI (Yang et al. 2020)) is a general-purpose, assumption-free tool for handling item nonresponse in big incomplete data by combining the theory of FHDI and parallel computing. FHDI cures multi-variate missing data by filling each missing unit with multiple observed values (thus, hot-deck) without resorting to distributional assumptions. P-FHDI can tackle big incomplete data with millions of instances (big -n) or 10,000 variables (big -p). However, handling ultra incomplete data (i.e., concurrently big -n and big -p) with tremendous instances and high dimensionality has posed problems to P-FHDI due to excessive memory requirement and execution time. To tackle the aforementioned challenges, we propose the ultra data-oriented P-FHDI (named UP-FHDI) capable of curing ultra incomplete data. In addition to the parallel Jackknife method, this paper enables a computationally efficient ultra data-oriented variance estimation using parallel linearization techniques. Results confirm that UP-FHDI can tackle an ultra dataset with one million instances and 10,000 variables. This paper illustrates the special parallel algorithms of UP-FHDI and confirms its positive impact on the subsequent deep learning performance.