MODeLING.Vis: A Graphical User Interface Toolbox Developed for Machine Learning and Pattern Recognition of Biomolecular Data

被引:2
|
作者
Martins, Jorge Emanuel [1 ,2 ,3 ]
D'Alimonte, Davide [4 ]
Simoes, Joana [1 ]
Sousa, Sara [2 ]
Esteves, Eduardo [2 ]
Rosa, Nuno [2 ]
Correia, Maria Jose [2 ]
Simoes, Mario [1 ]
Barros, Marlene [2 ]
机构
[1] Univ Lisbon, Fac Med, Lab Mind Matter Interact Therapeut Intent LIMMIT, P-1649028 Lisbon, Portugal
[2] Univ Catolica Portuguesa, Fac Dent Med FMD, Ctr Interdisciplinary Res Hlth CIIS, P-3504505 Viseu, Portugal
[3] Univ Geneva, Sch Med, Dept Mental Hlth & Psychiat, Div Psychiat Specialties, CH-1226 Geneva, Switzerland
[4] Aequora, P-1600774 Lisbon, Portugal
来源
SYMMETRY-BASEL | 2023年 / 15卷 / 01期
关键词
cognition; data-mining; data exploration; data visualization; GUI toolbox; machine learning; molecular stratification; pattern recognition; symmetry; BLOOD-BRAIN-BARRIER; CAPILLARY-ELECTROPHORESIS; PROTEIN; TIME; IDENTIFICATION; BIOMARKERS; DISEASE;
D O I
10.3390/sym15010042
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Many scientific publications that affect machine learning have set the basis for pattern recognition and symmetry. In this paper, we revisit the concept of "Mind-life continuity" published by the authors, testing the symmetry between cognitive and electrophoretic strata. We opted for machine learning to analyze and understand the total protein profile of neurotypical subjects acquired by capillary electrophoresis. Capillary electrophoresis permits a cost-wise solution but lacks modern proteomic techniques' discriminative and quantification power. To compensate for this problem, we developed tools for better data visualization and exploration in this work. These tools permitted us to examine better the total protein profile of 92 young adults, from 19 to 25 years old, healthy university students at the University of Lisbon, with no serious, uncontrolled, or chronic diseases affecting the nervous system. As a result, we created a graphical user interface toolbox named MODeLING.Vis, which showed specific expected protein profiles present in saliva in our neurotypical sample. The developed toolbox permitted data exploration and hypothesis testing of the biomolecular data. In conclusion, this analysis offered the data mining of the acquired neuroproteomics data in the molecular weight range from 9.1 to 30 kDa. This molecular weight range, obtained by pattern recognition of our dataset, is characteristic of the small neuroimmune molecules and neuropeptides. Consequently, MODeLING.Vis offers a machine-learning solution for probing into the neurocognitive response.
引用
收藏
页数:28
相关论文
共 46 条
  • [1] limmaGUI: A graphical user interface for linear modeling of microarray data
    Wettenhall, JM
    Smyth, GK
    BIOINFORMATICS, 2004, 20 (18) : 3705 - 3706
  • [2] Design of a graphical user interface for few-shot machine learning classification of electron microscopy data
    Doty, Christina
    Gallagher, Shaun
    Cui, Wenqi
    Chen, Wenya
    Bhushan, Shweta
    Oostrom, Marjolein
    Akers, Sarah
    Spurgeon, Steven R.
    COMPUTATIONAL MATERIALS SCIENCE, 2022, 203
  • [3] An Application of Extreme Learning Machine in A Graphical User Interface for Magnetorheological Fluid Study
    Bahiuddin, Irfan
    Usak, Saidatina Aisyah Mohd
    Shapiai, Mohd Ibrahim
    Mazlan, Saiful Amri
    2017 INTERNATIONAL CONFERENCE ON ROBOTICS, AUTOMATION AND SCIENCES (ICORAS), 2017,
  • [4] A Graphical User Interface for Fast Evaluation and Testing of Machine Learning Models Performance
    Leonel, Rosas-Arias
    Gabriel, Sanchez-Perez
    Linda K, Toscano-Medina
    Hector M, Perez-Meana
    Jose, Portillo-Portillo
    2019 7TH INTERNATIONAL WORKSHOP ON BIOMETRICS AND FORENSICS (IWBF), 2019,
  • [5] affylmGUI: a graphical user interface for linear modeling of single channel microarray data
    Wettenhall, JM
    Simpson, KM
    Satterley, K
    Smyth, GK
    BIOINFORMATICS, 2006, 22 (07) : 897 - 899
  • [6] Modeling strength characteristics of basalt fiber reinforced concrete using multiple explainable machine learning with a graphical user interface
    Kulasooriya, W. K. V. J. B.
    Ranasinghe, R. S. S.
    Perera, Udara Sachinthana
    Thisovithan, P.
    Ekanayake, I. U.
    Meddage, D. P. P.
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [7] MVPANI: A Toolkit With Friendly Graphical User Interface for Multivariate Pattern Analysis of Neuroimaging Data
    Peng, Yanmin
    Zhang, Xi
    Li, Yifan
    Su, Qian
    Wang, Sijia
    Liu, Feng
    Yu, Chunshui
    Liang, Meng
    FRONTIERS IN NEUROSCIENCE, 2020, 14
  • [8] Pattern Recognition for Prosthetic Hand User's Intentions using EMG Data and Machine Learning Techniques
    Young, Sam
    Stephens-Fripp, Benjamin
    Gillett, Andrew
    Zhou, Hao
    Alici, Gursel
    2019 IEEE/ASME INTERNATIONAL CONFERENCE ON ADVANCED INTELLIGENT MECHATRONICS (AIM), 2019, : 544 - 550
  • [9] Web-based graphical user interface for automated materials feature engineering for machine learning
    Hasukawa, Yoshiki
    Kuwahara, Mikael
    Garcia-Escobar, Fernando
    Takahashi, Lauren
    Taniike, Toshiaki
    Takahashi, Keisuke
    SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS-METHODS, 2025, 5 (01):
  • [10] Implementation of Smartwatch User Interface Using Machine Learning based Motion Recognition
    Lee, Kyung-Taek
    Yoon, Hyoseok
    Lee, Youn-Sung
    2018 32ND INTERNATIONAL CONFERENCE ON INFORMATION NETWORKING (ICOIN), 2018, : 807 - 809